Factsheet for GSMUA_Achr6P13100_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g01580.t01	Wine grape	cytosol	85.86	87.29
KRH59511	Soybean	cytosol, nucleus	83.88	85.0
Solyc11g005550.1.1	Tomato	cytosol	80.26	81.61
PGSC0003DMT400010145	Potato	cytosol	80.26	81.61
Bra024323.1-P	Field mustard	cytosol	79.61	81.48
CDY08856	Canola	cytosol	79.61	81.48
CDX84544	Canola	cytosol	79.93	81.0
AT5G64730.1	Thale cress	cytosol	79.61	80.94
KRH43376	Soybean	nucleus	84.54	80.06
Os02t0543400-01	Rice	cytosol, mitochondrion	76.32	77.08
EES05216	Sorghum	cytosol	76.32	76.57
Zm00001d050708_P002	Maize	cytosol	75.66	75.91
TraesCS6D01G232000.1	Wheat	cytosol	74.34	75.33
TraesCS6B01G275200.2	Wheat	cytosol	74.34	75.33
TraesCS6A01G250200.1	Wheat	cytosol	74.34	75.33
HORVU6Hr1G063000.1	Barley	cytosol	74.67	71.38
HORVU0Hr1G027010.1	Barley	plastid	74.67	63.23
GSMUA_Achr7P01850_001	Banana	plastid	21.05	27.35
GSMUA_Achr2P08580_001	Banana	cytosol	25.33	27.11
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	27.63	24.93
GSMUA_Achr8P28660_001	Banana	cytosol	25.66	23.15
GSMUA_Achr3P04370_001	Banana	cytosol	22.04	20.81
GSMUA_Achr8P10200_001	Banana	cytosol	5.26	17.98
GSMUA_Achr11P...	Banana	cytosol	20.39	17.97
GSMUA_Achr2P06000_001	Banana	cytosol	24.67	15.82
GSMUA_Achr3P29050_001	Banana	nucleus	23.68	15.06
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	4.28	13.83
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	21.38	13.37
GSMUA_Achr8P10210_001	Banana	cytosol	3.62	11.58
GSMUA_Achr8P10190_001	Banana	cytosol, plastid	9.87	10.87
GSMUA_Achr3P27210_001	Banana	golgi	15.79	10.15
GSMUA_Achr4P29380_001	Banana	nucleus	22.04	9.42
GSMUA_Achr4P05370_001	Banana	golgi, mitochondrion	16.78	6.43
GSMUA_Achr1P08830_001	Banana	cytosol	17.76	5.58
GSMUA_Achr9P23740_001	Banana	golgi	17.76	5.15
GSMUA_Achr3P27200_001	Banana	golgi, plasma membrane, vacuole	4.61	3.77

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr6G13100_001	EnsemblPlants:GSMUA_Achr6P13100_001	EnsemblPlants:GSMUA_Achr6T13100_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0T6K8	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22847	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002959F72	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

WD repeat domain-containing protein 83 [Source:GMGC_GENE;Acc:GSMUA_Achr6G13100_001]

Coordinates

chr6:+:8785574..8788685

Molecular Weight (calculated)

33445.5 Da

IEP (calculated)

7.193

GRAVY (calculated)

-0.276

Length

304 amino acids

Sequence
(BLAST)

001: MASGGSGGVE LPRKEANVLK GHEGPVLAVR FNGDGNYCLS CGKDRTLRLW NPHRGIHIKT YKSHGREIRD VHVTSDNAKL CSCGGDRQIF YWDVSTGRVI
101: RKFRGHDSEV NAVKFNAYDS VVVSAGYDQS VRAWDCRSQS TEPIQIIDTF QDSVMSVCLT KTEIIAGSVD GTVRTFDIRI GRELVDNLGQ AVNCISLSND
201: GNCVLASCLD STLRLLDRST GELLQEYKGH TCKSYKMDCC LTNTDAHVTG GSEDGTIFFW DLVDASVVSS FKAHRSVVTS VNYHPKECCM LTSSVDGTVR
301: VWKP

Best Arabidopsis Sequence Match ( AT5G64730.1 )
(BLAST)

001: MSATELPTKE AHILKGHEGA VLAARFNGDG NYALTCGKDR TIRLWNPHRG ILIKTYKSHG REVRDVHVTS DNAKFCSCGG DRQVYYWDVS TGRVIRKFRG
101: HDGEVNAVKF NDSSSVVVSA GFDRSLRVWD CRSHSVEPVQ IIDTFLDTVM SVVLTKTEII GGSVDGTVRT FDMRIGREMS DNLGQPVNCI SISNDGNCVL
201: AGCLDSTLRL LDRTTGELLQ VYKGHISKSF KTDCCLTNSD AHVIGGSEDG LVFFWDLVDA KVLSKFRAHD LVVTSVSYHP KEDCMLTSSV DGTIRVWKK

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.