Factsheet for GSMUA_Achr7P01850_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0151g00960.t01	Wine grape	cytosol	71.79	53.33
KRH71413	Soybean	nucleus	70.09	51.25
GSMUA_Achr2P08580_001	Banana	cytosol	61.54	50.7
Solyc09g065290.2.1	Tomato	cytosol, plastid	67.52	50.16
KRH32024	Soybean	cytosol	68.38	50.16
PGSC0003DMT400049837	Potato	cytosol, plastid	65.38	48.57
TraesCS2B01G224500.1	Wheat	plastid	68.38	48.19
TraesCS2A01G196900.1	Wheat	plastid	67.52	47.73
KXG36525	Sorghum	plastid	67.09	47.72
Zm00001d021868_P001	Maize	plastid	66.24	47.26
Zm00001d021866_P001	Maize	plastid	66.24	47.26
Os07t0572000-01	Rice	plastid	67.95	47.04
AT4G02730.1	Thale cress	cytosol	64.53	45.35
CDX91316	Canola	cytosol	61.54	44.17
TraesCS2D01G204900.1	Wheat	cytosol, plastid	67.95	44.04
Bra018529.1-P	Field mustard	cytosol	61.11	43.87
CDX97287	Canola	cytosol	61.11	43.87
HORVU2Hr1G041020.2	Barley	cytosol, plastid	67.09	43.61
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	59.83	41.54
CDX70436	Canola	plastid	23.5	32.93
GSMUA_Achr6P13100_001	Banana	cytosol	27.35	21.05
GSMUA_Achr3P04370_001	Banana	cytosol	24.79	18.01
GSMUA_Achr3P29050_001	Banana	nucleus	35.04	17.15
GSMUA_Achr8P28660_001	Banana	cytosol	22.65	15.73
GSMUA_Achr11P...	Banana	cytosol	21.79	14.78
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	5.56	13.83
GSMUA_Achr8P10200_001	Banana	cytosol	5.13	13.48
GSMUA_Achr8P10210_001	Banana	cytosol	5.13	12.63
GSMUA_Achr2P06000_001	Banana	cytosol	22.22	10.97
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	20.09	9.67
GSMUA_Achr3P27210_001	Banana	golgi	17.52	8.67
GSMUA_Achr8P10190_001	Banana	cytosol, plastid	8.12	6.88
GSMUA_Achr4P29380_001	Banana	nucleus	20.09	6.61
GSMUA_Achr4P05370_001	Banana	golgi, mitochondrion	20.09	5.93
GSMUA_Achr1P08830_001	Banana	cytosol	19.23	4.65
GSMUA_Achr9P23740_001	Banana	golgi	19.66	4.39
GSMUA_Achr3P27200_001	Banana	golgi, plasma membrane, vacuole	5.98	3.77

Protein Annotations

MapMan:12.3.3.2.3	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr7G01850_001
EnsemblPlants:GSMUA_Achr7P01850_001	EnsemblPlants:GSMUA_Achr7T01850_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0TDX5
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22847	PANTHER:PTHR22847:SF602
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002968B23	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

Putative WD repeat-containing protein 5 [Source:GMGC_GENE;Acc:GSMUA_Achr7G01850_001]

Coordinates

chr7:-:1424775..1429916

Molecular Weight (calculated)

25811.5 Da

IEP (calculated)

8.358

GRAVY (calculated)

-0.213

Length

234 amino acids

Sequence
(BLAST)

001: MSTPGPAQAA PASPYRPYRL SRTLTDHRRA VSCVKFSNDG LYLASASLDK TVIVWASDTF GTVATFSGHS EGISDLAWSS DSHYTVRIWD VKSGKCIKTI
101: EAHDEPVLID DKTPAVSFSK FSPNGKFILI ATLDDTLKLC NYSTGKFLKI YTGHVNRRYC ITSAFSVTNG KYIVSGSEDK CAYIWDLQSK QMIQKLEGHT
201: DTVISVSCHP TRNIIASAGL DNDKTVRIWI QETA

Best Arabidopsis Sequence Match ( AT4G02730.1 )
(BLAST)

001: MPSGGNGTSN GVANANSTGN AGTSGNVPIY KPYRHLKTLE GHTAAISCVK FSNDGNLLAS ASVDKTMILW SATNYSLIHR YEGHSSGISD LAWSSDSHYT
101: CSASDDCTLR IWDARSPYEC LKVLRGHTNF VFCVNFNPPS NLIVSGSFDE TIRIWEVKTG KCVRMIKAHS MPISSVHFNR DGSLIVSASH DGSCKIWDAK
201: EGTCLKTLID DKSPAVSFAK FSPNGKFILV ATLDSTLKLS NYATGKFLKV YTGHTNKVFC ITSAFSVTNG KYIVSGSEDN CVYLWDLQAR NILQRLEGHT
301: DAVISVSCHP VQNEISSSGN HLDKTIRIWK QDA

Arabidopsis Description

WDR5BCOMPASS-like H3K4 histone methylase component WDR5B [Source:UniProtKB/Swiss-Prot;Acc:Q9SY00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.