Factsheet for Zm00001d021868_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021866_P001	Maize	plastid	98.17	98.17
KXG36525	Sorghum	plastid	96.04	95.74
Os07t0572000-01	Rice	plastid	87.8	85.21
TraesCS2A01G196900.1	Wheat	plastid	85.98	85.2
TraesCS2B01G224500.1	Wheat	plastid	85.67	84.64
TraesCS2D01G204900.1	Wheat	cytosol, plastid	85.37	77.56
HORVU2Hr1G041020.2	Barley	cytosol, plastid	85.06	77.5
Solyc09g065290.2.1	Tomato	cytosol, plastid	64.02	66.67
PGSC0003DMT400049837	Potato	cytosol, plastid	63.72	66.35
GSMUA_Achr7P01850_001	Banana	plastid	47.26	66.24
VIT_07s0151g00960.t01	Wine grape	cytosol	60.98	63.49
CDX91316	Canola	cytosol	60.06	60.43
Bra018529.1-P	Field mustard	cytosol	59.76	60.12
CDX97287	Canola	cytosol	59.76	60.12
AT4G02730.1	Thale cress	cytosol	60.67	59.76
KRH71413	Soybean	nucleus	58.23	59.69
KRH32024	Soybean	cytosol	57.62	59.25
Zm00001d033849_P002	Maize	extracellular, nucleus	54.88	56.43
CDX70436	Canola	plastid	24.09	47.31
Zm00001d046930_P001	Maize	cytosol, extracellular, plasma membrane	26.22	26.38
Zm00001d036709_P001	Maize	cytosol	26.22	26.38
Zm00001d050708_P002	Maize	cytosol	23.78	25.74
Zm00001d039211_P006	Maize	cytosol	29.57	19.52
Zm00001d041945_P003	Maize	cytosol	21.65	16.71
Zm00001d033309_P003	Maize	cytosol	21.65	14.7
Zm00001d033994_P002	Maize	mitochondrion, nucleus	22.26	14.4
Zm00001d011779_P005	Maize	cytosol	21.04	14.08
Zm00001d042091_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome, plastid	24.7	11.28
Zm00001d033713_P002	Maize	cytosol, extracellular, plastid	16.46	10.78
Zm00001d012620_P025	Maize	cytosol	19.82	7.79
Zm00001d001828_P033	Maize	cytosol	21.04	7.48
Zm00001d026621_P006	Maize	cytosol	20.43	7.36
Zm00001d032598_P023	Maize	cytosol, plasma membrane, plastid	20.12	7.15

Protein Annotations

MapMan:12.3.3.2.3	Gene3D:2.130.10.10	UniProt:A0A1D6IHE0	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0016740
GO:GO:0032259	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	ProteinID:ONM58918.1	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22847	PANTHER:PTHR22847:SF602
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000220A065	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d021868	EnsemblPlants:Zm00001d021868_P001	EnsemblPlants:Zm00001d021868_T001	SEG:seg

Description

COMPASS-like H3K4 histone methylase component WDR5B

Coordinates

chr7:+:164951419..164954177

Molecular Weight (calculated)

35494.0 Da

IEP (calculated)

8.429

GRAVY (calculated)

-0.094

Length

328 amino acids

Sequence
(BLAST)

001: MSQQPAPAPP YRPYRQVREA TPHSRAISCV RFSPCGRLLA TASLDGTVAL LSPSSLAVIA VLRGHSDGVS DLSWSTESFY LCSASDDRTI RIWDIRPVLA
101: GGAQAAAVSG ADRCVRVLKG HTNFVFSANF NPQTSSQIAS GGFDCTVRIW DATSGRCTRA IEAHSEPVTS VHFIRDGSIV VSGSHDGSCK IWDAKSGACL
201: KTVIDEKKPA VSFSMFSPNG KFILVAMLDN SLKLCNFATG KFLKVYSGHV NRQYCIQSAF SVTNGKYIVS GSEDNCVYIW DLQGRNVLQK LEGHTDTVIS
301: VSCHPTENKI ASGGLHNDRT VRLWVQDS

Best Arabidopsis Sequence Match ( AT4G02730.1 )
(BLAST)

001: MPSGGNGTSN GVANANSTGN AGTSGNVPIY KPYRHLKTLE GHTAAISCVK FSNDGNLLAS ASVDKTMILW SATNYSLIHR YEGHSSGISD LAWSSDSHYT
101: CSASDDCTLR IWDARSPYEC LKVLRGHTNF VFCVNFNPPS NLIVSGSFDE TIRIWEVKTG KCVRMIKAHS MPISSVHFNR DGSLIVSASH DGSCKIWDAK
201: EGTCLKTLID DKSPAVSFAK FSPNGKFILV ATLDSTLKLS NYATGKFLKV YTGHTNKVFC ITSAFSVTNG KYIVSGSEDN CVYLWDLQAR NILQRLEGHT
301: DAVISVSCHP VQNEISSSGN HLDKTIRIWK QDA

Arabidopsis Description

WDR5BCOMPASS-like H3K4 histone methylase component WDR5B [Source:UniProtKB/Swiss-Prot;Acc:Q9SY00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.