Factsheet for PGSC0003DMT400049837

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065290.2.1	Tomato	cytosol, plastid	97.14	97.14
VIT_07s0151g00960.t01	Wine grape	cytosol	75.24	75.24
KRH71413	Soybean	nucleus	73.33	72.19
KRH32024	Soybean	cytosol	73.02	72.1
Bra018529.1-P	Field mustard	cytosol	69.21	66.87
CDX97287	Canola	cytosol	69.21	66.87
CDX91316	Canola	cytosol	68.89	66.56
AT4G02730.1	Thale cress	cytosol	69.21	65.47
GSMUA_Achr7P01850_001	Banana	plastid	48.57	65.38
Zm00001d021866_P001	Maize	plastid	66.67	64.02
Zm00001d021868_P001	Maize	plastid	66.35	63.72
KXG36525	Sorghum	plastid	66.35	63.53
TraesCS2A01G196900.1	Wheat	plastid	65.71	62.54
TraesCS2B01G224500.1	Wheat	plastid	65.4	62.05
Os07t0572000-01	Rice	plastid	65.4	60.95
PGSC0003DMT400078695	Potato	cytosol	58.1	58.28
CDX70436	Canola	plastid	30.48	57.48
HORVU2Hr1G041020.2	Barley	cytosol, plastid	65.08	56.94
TraesCS2D01G204900.1	Wheat	cytosol, plastid	65.08	56.79
PGSC0003DMT400010145	Potato	cytosol	28.89	30.43
PGSC0003DMT400067694	Potato	cytosol	29.52	27.35
PGSC0003DMT400023040	Potato	mitochondrion	20.63	21.17
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	26.67	21.16
PGSC0003DMT400046634	Potato	cytosol	31.75	20.79
PGSC0003DMT400039207	Potato	cytosol	23.17	14.34
PGSC0003DMT400056446	Potato	cytosol	22.54	12.43
PGSC0003DMT400065114	Potato	cytosol	22.22	8.63
PGSC0003DMT400057760	Potato	cytosol	3.49	1.38
PGSC0003DMT400056447	Potato	extracellular	0.0	0.0

Protein Annotations

EntrezGene:102589999	MapMan:12.3.3.2.3	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1BPE6	PFAM:PF00400
EnsemblPlantsGene:PGSC0003DMG400019361	PGSC:PGSC0003DMG400019361	EnsemblPlants:PGSC0003DMT400049837	PIRSF:PIRSF002394	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22847	PANTHER:PTHR22847:SF602	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000294CCEC	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_006349687.1	SEG:seg	:	:	:	:

Description

WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019361]

Coordinates

chr9:+:47760211..47761894

Molecular Weight (calculated)

34738.0 Da

IEP (calculated)

8.480

GRAVY (calculated)

-0.174

Length

315 amino acids

Sequence
(BLAST)

001: MANNNNNQPT TPPYLPYRQK KVLTGHTSAV SCVKFANNGQ LFASASLDKT LIVWSTQTLT QLSRLVGHSD GVSDLSWSSD SSYICSASDD RTLRIWDART
101: AESVKTLRGH TGFVFCVNFN PQSNFIVSGS FDETFRVWDV KTGKPIHAIR AHSMPVTSVH FNKDGSLIVS GSHDGSCKIW DTASGACLKT LIDDKVPAVS
201: FAKFSPNGKF ILVATLDNTL KLWNYSSGKF IKSYAGHVNR VYCITSTFSV TNGKYIVSGS EDQCVYVWDL QGKNLLQKFE GHTDTVISVC CHPIENMILS
301: AGLNNDRTVR VWVQD

Best Arabidopsis Sequence Match ( AT4G02730.1 )
(BLAST)

001: MPSGGNGTSN GVANANSTGN AGTSGNVPIY KPYRHLKTLE GHTAAISCVK FSNDGNLLAS ASVDKTMILW SATNYSLIHR YEGHSSGISD LAWSSDSHYT
101: CSASDDCTLR IWDARSPYEC LKVLRGHTNF VFCVNFNPPS NLIVSGSFDE TIRIWEVKTG KCVRMIKAHS MPISSVHFNR DGSLIVSASH DGSCKIWDAK
201: EGTCLKTLID DKSPAVSFAK FSPNGKFILV ATLDSTLKLS NYATGKFLKV YTGHTNKVFC ITSAFSVTNG KYIVSGSEDN CVYLWDLQAR NILQRLEGHT
301: DAVISVSCHP VQNEISSSGN HLDKTIRIWK QDA

Arabidopsis Description

WDR5BCOMPASS-like H3K4 histone methylase component WDR5B [Source:UniProtKB/Swiss-Prot;Acc:Q9SY00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.