Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400065114 | Potato | cytosol | 74.08 | 52.16 |
| PGSC0003DMT400049837 | Potato | cytosol, plastid | 12.43 | 22.54 |
| PGSC0003DMT400023040 | Potato | mitochondrion | 11.21 | 20.85 |
| PGSC0003DMT400078695 | Potato | cytosol | 11.38 | 20.7 |
| PGSC0003DMT400067694 | Potato | cytosol | 12.26 | 20.59 |
| PGSC0003DMT400010145 | Potato | cytosol | 8.23 | 15.72 |
| PGSC0003DMT400046634 | Potato | cytosol | 12.78 | 15.18 |
| PGSC0003DMT400073944 | Potato | cytoskeleton, cytosol, nucleus | 10.51 | 15.11 |
| PGSC0003DMT400039207 | Potato | cytosol | 11.03 | 12.38 |
| PGSC0003DMT400057760 | Potato | cytosol | 9.63 | 6.92 |
| PGSC0003DMT400056447 | Potato | extracellular | 0.35 | 1.89 |
| CDY69403 | Canola | nucleus | 0.18 | 0.54 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 |
| GO:GO:0008017 | GO:GO:0008150 | GO:GO:0008352 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:Katanin_bsu1 | UniProt:M1BZF9 | HAMAP:MF_03022 |
| PFAM:PF00400 | EnsemblPlantsGene:PGSC0003DMG401021929 | PGSC:PGSC0003DMG401021929 | EnsemblPlants:PGSC0003DMT400056446 | PRINTS:PR00320 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI000294A5B8 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
Katanin P80 subunit [Source:PGSC_GENE;Acc:PGSC0003DMG401021929]
Coordinates
chr2:-:11260012..11268858
Molecular Weight (calculated)
62431.6 Da
IEP (calculated)
6.967
GRAVY (calculated)
-0.326
Length
571 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKVEDLNQI LENLDNTVTE EFVAHSLSVN CLKIGRKSSR VLLTGGEDHK VNLWAIGKPN AILSLSGHSS GIDSVSFDSS EVLVAAGAAS GTIKLWDLEE
101: AKIVRTLTGH RSNCISLDFH PFGEFFASGS LDTNLKIWDI RRKGCIHTYK GHSRGVNAIR FTPDGRWVVS GGEDNTVKLW DLTAGKLLHD FKCHEGQIQC
201: IDFHPHEFLL ATGSADRTVK FWDLETFELI GSSGPETSGV RCMTFNPDGR TLLCGLHESL KVCSWEPIKC HDTVDVGWSR LSDLNIHEGK LLGCSYNQSC
301: VGVWVVDISR LEPYAMGSTT RLNGHSDVKS NSSVNLSNLV EDASKANLGR LSISQNSDPV KETKSFGRLS VSQNLDQRDS RALTIFIYLL NEATANAPGT
401: PQRINLSVGS KAAPINTTAV PNTTVLKRNS AKAHSTANSS IINRSEIIPV IVPRNNDRME QASESRKEGI TTRAMQQSLQ TKVSDLRKFP TLKEDLGRSN
501: AVSQSDIEVP NAIEFGSIAD KNTFPSVKCS ILGTAATERN VKDDNSLVST KPEVHSAPEL LSRNQNENCA Y
101: AKIVRTLTGH RSNCISLDFH PFGEFFASGS LDTNLKIWDI RRKGCIHTYK GHSRGVNAIR FTPDGRWVVS GGEDNTVKLW DLTAGKLLHD FKCHEGQIQC
201: IDFHPHEFLL ATGSADRTVK FWDLETFELI GSSGPETSGV RCMTFNPDGR TLLCGLHESL KVCSWEPIKC HDTVDVGWSR LSDLNIHEGK LLGCSYNQSC
301: VGVWVVDISR LEPYAMGSTT RLNGHSDVKS NSSVNLSNLV EDASKANLGR LSISQNSDPV KETKSFGRLS VSQNLDQRDS RALTIFIYLL NEATANAPGT
401: PQRINLSVGS KAAPINTTAV PNTTVLKRNS AKAHSTANSS IINRSEIIPV IVPRNNDRME QASESRKEGI TTRAMQQSLQ TKVSDLRKFP TLKEDLGRSN
501: AVSQSDIEVP NAIEFGSIAD KNTFPSVKCS ILGTAATERN VKDDNSLVST KPEVHSAPEL LSRNQNENCA Y
001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARGGLV AKSVLELNLA FQEVSS
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARGGLV AKSVLELNLA FQEVSS
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.