Factsheet for PGSC0003DMT400039207

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g111740.2.1	Tomato	cytosol	90.18	95.23
VIT_17s0000g09750.t01	Wine grape	cytosol	76.03	74.71
KRH57171	Soybean	cytosol	74.07	73.35
KRH03886	Soybean	nucleus	73.87	73.15
CDY05801	Canola	cytosol	69.74	70.72
AT5G50230.1	Thale cress	cytosol	70.14	70.14
GSMUA_Achr8P28660_001	Banana	cytosol	45.58	68.84
GSMUA_Achr2P06000_001	Banana	cytosol	60.51	64.98
Bra037932.1-P	Field mustard	mitochondrion	70.14	62.09
CDY05802	Canola	mitochondrion	70.14	62.09
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	10.61	57.45
Zm00001d033994_P002	Maize	mitochondrion, nucleus	56.19	56.41
Os03t0746600-01	Rice	nucleus	56.58	56.36
HORVU5Hr1G094540.7	Barley	cytosol, mitochondrion, nucleus	53.05	52.43
TraesCS5D01G394200.1	Wheat	cytosol	52.85	52.13
KXG37566	Sorghum	plastid	56.78	50.26
PGSC0003DMT400078695	Potato	cytosol	15.52	25.16
PGSC0003DMT400010145	Potato	cytosol	14.54	24.75
PGSC0003DMT400049837	Potato	cytosol, plastid	14.34	23.17
PGSC0003DMT400067694	Potato	cytosol	13.75	20.59
PGSC0003DMT400046634	Potato	cytosol	18.27	19.33
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	14.34	18.39
PGSC0003DMT400023040	Potato	mitochondrion	10.22	16.94
PGSC0003DMT400056446	Potato	cytosol	12.38	11.03
PGSC0003DMT400065114	Potato	cytosol	12.57	7.89
PGSC0003DMT400057760	Potato	cytosol	1.38	0.88
PGSC0003DMT400056447	Potato	extracellular	0.0	0.0

Protein Annotations

EntrezGene:102600593	Gene3D:2.130.10.10	MapMan:35.1	InterPro:Autophagy-rel_prot_16	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M1B7X3	PFAM:PF00400	PFAM:PF08614	EnsemblPlantsGene:PGSC0003DMG402015159	PGSC:PGSC0003DMG402015159	EnsemblPlants:PGSC0003DMT400039207
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19878	PANTHER:PTHR19878:SF8
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000295D526	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006351438.1	:	:	:

Description

Protein tipD [Source:PGSC_GENE;Acc:PGSC0003DMG402015159]

Coordinates

chr3:-:51379433..51385736

Molecular Weight (calculated)

56062.3 Da

IEP (calculated)

6.237

GRAVY (calculated)

-0.251

Length

509 amino acids

Sequence
(BLAST)

001: MAYEEVAIEA IKHALKALRK RHLVEEGAHA PALAALNRPF VLQGSEWKEK AENLEVELQQ CYKAQARLSE QLVVEVAESR ASKSLLQEKE TLITDLQNEL
101: NQARDECSHL TELLGEKTKA LELLMAEHQD LKAQLEAMTL RANNAEAENK TLVDRWMLQK MQDAERLNEA NALYGDMLDK VKAASIEKLA RQQVDGVVRQ
201: SEDGAEFYVE SSIPSTCKQR IPAHDGGCAS ILFEYNSSKL ISGGQDRAIK MWDTTSGSLT NSFYGCLGSV LDLSITHDNK FIIAASSSNN LYVWDANSGR
301: IRHTLTGHID KVCAVDVSKF SSRYVVSAAY DRTIKVWDLQ KGYCNNTIIF HSNCNSLAFS MDALTICSGH VDGNLRLWDV QTGKLLSEVA AHSQAVTSVS
401: LSRNGNMILT SGRDNLHNLF DIRTLEICGT FRSNANRVAS NWSRSCISAD DGYVTAGSVD GSVHIWSVLN GKMVSTLKEH TSSVLCCSWS GLGNPLATSD
501: KSGTICIWS

Best Arabidopsis Sequence Match ( AT5G50230.1 )
(BLAST)

001: MVQEEKAMEA INDALRALRK RHLLEEGAHA PAISALSKPL ISQGSEWKEK TEKLETELQQ CYKAQSRLSE QLVIEVAESR TSKAILQEKE LLINDLQKEL
101: TQRREDCTRL QEELEEKTKT VDVLIAENLE IRSQLEEMTS RVQKAETENK MLIDRWMLQK MQDAERLNEA NDLYEEMLAK LKANGLETLA RQQVDGIVRR
201: NEDGTDHFVE STIPSTCANR IHAHEGGCGS IVFEYNSGTL FTGGQDRAVK MWDTNSGTLI KSLYGSLGNI LDMAVTHDNK SVIAATSSNN LFVWDVSSGR
301: VRHTLTGHTD KVCAVDVSKF SSRHVVSAAY DRTIKLWDLH KGYCTNTVLF TSNCNAICLS IDGLTVFSGH MDGNLRLWDI QTGKLLSEVA GHSSAVTSVS
401: LSRNGNRILT SGRDNVHNVF DTRTLEICGT LRASGNRLAS NWSRSCISPD DDYVAAGSAD GSVHVWSLSK GNIVSILKEQ TSPILCCSWS GIGKPLASAD
501: KNGYVCTWT

Arabidopsis Description

ATG16Autophagy-related protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.