Factsheet for GSMUA_Achr2P06000_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P28660_001	Banana	cytosol	60.13	84.57
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	14.35	72.34
Solyc03g111740.2.1	Tomato	cytosol	64.56	63.49
KRH57171	Soybean	cytosol	66.24	61.09
PGSC0003DMT400039207	Potato	cytosol	64.98	60.51
KRH03886	Soybean	nucleus	65.4	60.31
VIT_17s0000g09750.t01	Wine grape	cytosol	64.56	59.07
CDY05801	Canola	cytosol	62.24	58.76
AT5G50230.1	Thale cress	cytosol	61.81	57.56
Zm00001d033994_P002	Maize	mitochondrion, nucleus	56.12	52.47
Os03t0746600-01	Rice	nucleus	56.12	52.05
CDY05802	Canola	mitochondrion	61.6	50.78
Bra037932.1-P	Field mustard	mitochondrion	61.39	50.61
TraesCS5D01G394200.1	Wheat	cytosol	53.59	49.22
HORVU5Hr1G094540.7	Barley	cytosol, mitochondrion, nucleus	52.95	48.74
KXG37566	Sorghum	plastid	56.33	46.43
GSMUA_Achr6P13100_001	Banana	cytosol	15.82	24.67
GSMUA_Achr3P04370_001	Banana	cytosol	15.61	22.98
GSMUA_Achr7P01850_001	Banana	plastid	10.97	22.22
GSMUA_Achr2P08580_001	Banana	cytosol	12.66	21.13
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	14.77	20.77
GSMUA_Achr11P...	Banana	cytosol	14.35	19.71
GSMUA_Achr3P29050_001	Banana	nucleus	18.14	17.99
GSMUA_Achr8P10200_001	Banana	cytosol	3.16	16.85
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	14.56	14.2
GSMUA_Achr3P27210_001	Banana	golgi	13.71	13.74
GSMUA_Achr8P10190_001	Banana	cytosol, plastid	7.81	13.41
GSMUA_Achr8P10210_001	Banana	cytosol	2.32	11.58
GSMUA_Achr4P29380_001	Banana	nucleus	14.56	9.7
GSMUA_Achr4P05370_001	Banana	golgi, mitochondrion	14.56	8.7
GSMUA_Achr1P08830_001	Banana	cytosol	13.5	6.61
GSMUA_Achr9P23740_001	Banana	golgi	14.56	6.58
GSMUA_Achr3P27200_001	Banana	golgi, plasma membrane, vacuole	3.38	4.31

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:Autophagy-rel_prot_16	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr2G06000_001	EnsemblPlants:GSMUA_Achr2P06000_001	EnsemblPlants:GSMUA_Achr2T06000_001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:M0S5J1	PFAM:PF00400	PFAM:PF08614	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19878	PANTHER:PTHR19878:SF8	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0002951D63	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

Putative Protein tipD [Source:GMGC_GENE;Acc:GSMUA_Achr2G06000_001]

Coordinates

chr2:-:10875378..10879601

Molecular Weight (calculated)

52647.1 Da

IEP (calculated)

6.373

GRAVY (calculated)

-0.344

Length

474 amino acids

Sequence
(BLAST)

001: MHKGCLIFGL EWKEKVENLE MELQHCYKAH AQLSEQLVVE VAECRTSKAL VQEKEELIRN LQYDISQARE ENLQLKQDLY EKTQALDLLT SESQSLKLQH
101: EEIRLKLKKA ETENKDLIDR WMLEKMNTAE KLNEANSLYD ELMQQLKVSS SEHIARQQVD GVVRQMEPGY ADHVESAIPS SCRHTIHAHD GGCGSILFQH
201: NSDMLISGGQ DRTVKVWDTR SGTLSSTLHG CLGSVLDLAI THDNRSIIAA SSSNNLYVWQ TSSGRVQHTL TGHTDKVCAV DTSKVSSRNV VSAAYDHTMK
301: VWDPVKGYCT STIIFQSNCN ALSYSMDGLT FCSGHVDGNL RIWDSRMGKA VSEVAAHSQA VTSICVSRSG NLVLTSGRDN FHNLFDLRTL EVCGTFKANG
401: NRVASNWSRS CISADENFVA AGSADGFIYI WSRVKDNMLS VLEGHSSPVL SCSWNGMGNT LASADKNGNL CIWC

Best Arabidopsis Sequence Match ( AT5G50230.1 )
(BLAST)

001: MVQEEKAMEA INDALRALRK RHLLEEGAHA PAISALSKPL ISQGSEWKEK TEKLETELQQ CYKAQSRLSE QLVIEVAESR TSKAILQEKE LLINDLQKEL
101: TQRREDCTRL QEELEEKTKT VDVLIAENLE IRSQLEEMTS RVQKAETENK MLIDRWMLQK MQDAERLNEA NDLYEEMLAK LKANGLETLA RQQVDGIVRR
201: NEDGTDHFVE STIPSTCANR IHAHEGGCGS IVFEYNSGTL FTGGQDRAVK MWDTNSGTLI KSLYGSLGNI LDMAVTHDNK SVIAATSSNN LFVWDVSSGR
301: VRHTLTGHTD KVCAVDVSKF SSRHVVSAAY DRTIKLWDLH KGYCTNTVLF TSNCNAICLS IDGLTVFSGH MDGNLRLWDI QTGKLLSEVA GHSSAVTSVS
401: LSRNGNRILT SGRDNVHNVF DTRTLEICGT LRASGNRLAS NWSRSCISPD DDYVAAGSAD GSVHVWSLSK GNIVSILKEQ TSPILCCSWS GIGKPLASAD
501: KNGYVCTWT

Arabidopsis Description

ATG16Autophagy-related protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.