Factsheet for GSMUA_Achr4P10720_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P08580_001	Banana	cytosol	71.51	84.86
TraesCS4D01G056800.1	Wheat	cytosol	71.22	75.0
TraesCS4B01G056500.1	Wheat	cytosol	71.81	74.92
TraesCS4A01G258000.1	Wheat	cytosol	71.51	74.61
OQU91075	Sorghum	cytosol	70.62	74.61
Zm00001d033849_P002	Maize	extracellular, nucleus	70.62	74.61
Os03t0725400-02	Rice	cytosol	70.62	73.46
VIT_07s0205g00150.t01	Wine grape	cytosol	67.95	73.16
HORVU4Hr1G009500.1	Barley	cytosol, plastid	73.29	71.18
PGSC0003DMT400078695	Potato	cytosol	64.09	68.79
Solyc02g091790.2.1	Tomato	cytosol, nucleus	63.8	68.47
KRH50874	Soybean	nucleus	64.69	66.26
AT3G49660.1	Thale cress	cytosol	61.13	64.98
KRH02239	Soybean	nucleus	63.5	64.65
CDY00226	Canola	cytosol, nucleus, plastid	59.05	63.17
CDX86957	Canola	cytosol	58.46	63.14
Bra019610.1-P	Field mustard	plastid	59.05	62.78
GSMUA_Achr7P01850_001	Banana	plastid	41.54	59.83
GSMUA_Achr6P13100_001	Banana	cytosol	24.93	27.63
GSMUA_Achr3P04370_001	Banana	cytosol	24.33	25.47
GSMUA_Achr8P10200_001	Banana	cytosol	5.64	21.35
GSMUA_Achr8P28660_001	Banana	cytosol	20.18	20.18
GSMUA_Achr11P...	Banana	cytosol	20.18	19.71
GSMUA_Achr3P29050_001	Banana	nucleus	27.89	19.67
GSMUA_Achr2P06000_001	Banana	cytosol	20.77	14.77
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	20.47	14.2
GSMUA_Achr3P27210_001	Banana	golgi	18.4	13.11
GSMUA_Achr8P10210_001	Banana	cytosol	3.56	12.63
GSMUA_Achr8P10190_001	Banana	cytosol, plastid	9.79	11.96
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	3.26	11.7
GSMUA_Achr4P29380_001	Banana	nucleus	21.96	10.41
GSMUA_Achr4P05370_001	Banana	golgi, mitochondrion	21.07	8.95
GSMUA_Achr1P08830_001	Banana	cytosol	19.58	6.82
GSMUA_Achr9P23740_001	Banana	golgi	20.18	6.49
GSMUA_Achr3P27200_001	Banana	golgi, plasma membrane, vacuole	6.53	5.93

Protein Annotations

MapMan:12.3.3.2.3	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr4G10720_001	EnsemblPlants:GSMUA_Achr4P10720_001	EnsemblPlants:GSMUA_Achr4T10720_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0SMT9	PFAM:PF00400	PIRSF:PIRSF002394	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22847	PANTHER:PTHR22847:SF602	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002957B83
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

WD repeat-containing protein 5 [Source:GMGC_GENE;Acc:GSMUA_Achr4G10720_001]

Coordinates

chr4:-:7792072..7796117

Molecular Weight (calculated)

36482.8 Da

IEP (calculated)

5.520

GRAVY (calculated)

-0.101

Length

337 amino acids

Sequence
(BLAST)

001: MNLLESSAHT SGPCPLPAMD AAATVATAPQ PYVLHETLTS HNRAVSAVKF SPDGSLLASA SGDKTLRVWS TADFSLLTEL SGHEEGISDL SFSSDGRYLC
101: SASDDLTVRI WDLAAATAVK TLSGHSNYVF CCAYNPQSNM IASGSFDETV RVWEVKSGKC LRVLPAHSEP VTAVDFNYNG SLIVSSSYDG LCRIWDSATG
201: HCMKTLIDDE SPPVSFVKFS PNGNFVLAAT LDNTLRLWHF SAGKFLKTYT GHANSRFCIP ATFSVTNGKY IVSGSEDNCV YLWDLQTRKI VQKLEGHTDG
301: VIAVSCHPSE NMIASGALGN DKTVKVWVQR TEEQMED

Best Arabidopsis Sequence Match ( AT3G49660.1 )
(BLAST)

001: MAEEIPATAS FTPYVHSQTL TSHNRAVSSV KFSSDGRLLA SASADKTIRT YTINTINDPI AEPVQEFTGH ENGISDVAFS SDARFIVSAS DDKTLKLWDV
101: ETGSLIKTLI GHTNYAFCVN FNPQSNMIVS GSFDETVRIW DVTTGKCLKV LPAHSDPVTA VDFNRDGSLI VSSSYDGLCR IWDSGTGHCV KTLIDDENPP
201: VSFVRFSPNG KFILVGTLDN TLRLWNISSA KFLKTYTGHV NAQYCISSAF SVTNGKRIVS GSEDNCVHMW ELNSKKLLQK LEGHTETVMN VACHPTENLI
301: ASGSLDKTVR IWTQKKE

Arabidopsis Description

WDR5AWDR5a [Source:UniProtKB/TrEMBL;Acc:A0A178VK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.