CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50874	Soybean	nucleus	95.17	95.74
VIT_07s0205g00150.t01	Wine grape	cytosol	76.44	80.83
Solyc02g091790.2.1	Tomato	cytosol, nucleus	74.02	78.03
PGSC0003DMT400078695	Potato	cytosol	73.72	77.71
AT3G49660.1	Thale cress	cytosol	70.09	73.19
CDX86957	Canola	cytosol	66.16	70.19
CDY00226	Canola	cytosol, nucleus, plastid	65.86	69.21
Bra019610.1-P	Field mustard	plastid	65.56	68.45
GSMUA_Achr2P08580_001	Banana	cytosol	58.31	67.96
OQU91075	Sorghum	cytosol	64.35	66.77
TraesCS4D01G056800.1	Wheat	cytosol	63.75	65.94
Zm00001d033849_P002	Maize	extracellular, nucleus	63.14	65.52
TraesCS4A01G258000.1	Wheat	cytosol	63.75	65.33
TraesCS4B01G056500.1	Wheat	cytosol	63.44	65.02
Os03t0725400-02	Rice	cytosol	62.24	63.58
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	64.65	63.5
HORVU4Hr1G009500.1	Barley	cytosol, plastid	63.44	60.52
KRH32024	Soybean	cytosol	55.89	57.99
KRH71413	Soybean	nucleus	54.98	56.88
KRH59511	Soybean	cytosol, nucleus	27.19	30.0
KRH43376	Soybean	nucleus	27.19	28.04
KRH06660	Soybean	nucleus	26.89	25.8
KRG94875	Soybean	nucleus	26.89	25.8
KRH35009	Soybean	cytosol	9.37	22.46
KRH08668	Soybean	nucleus	31.12	21.46
KRH70275	Soybean	nucleus	30.82	21.25
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	24.17	20.46
KRH21524	Soybean	cytosol	13.6	20.0
KRH37298	Soybean	cytosol	20.54	17.94
KRH55267	Soybean	cytosol	7.55	17.61
KRH57171	Soybean	cytosol	22.05	14.2
KRH12069	Soybean	nucleus	20.24	14.08
KRH03886	Soybean	nucleus	21.45	13.81
KRH37088	Soybean	nucleus	19.64	13.63
KRH35010	Soybean	nucleus	5.14	10.56
KRH13395	Soybean	nucleus	22.66	10.5
KRH20750	Soybean	nucleus	22.66	10.47
KRH56498	Soybean	cytosol	20.85	9.09
KRG93160	Soybean	cytosol	20.85	9.09
KRH20528	Soybean	cytosol	19.03	8.1
KRH49977	Soybean	cytosol	15.41	7.45
KRH10790	Soybean	cytosol	18.43	7.39
KRH21526	Soybean	cytosol, peroxisome	4.83	2.67

Protein Annotations

EntrezGene:100798080	MapMan:12.3.3.2.3	Gene3D:2.130.10.10	EMBL:ACUP02010299	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_17G025400
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1MRH1	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlants:KRH02239	ProteinID:KRH02239	ProteinID:KRH02239.1	PFAM:PF00400	PIRSF:PIRSF002394
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22847	PANTHER:PTHR22847:SF560
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00023D52AD	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:WDR5	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:1862060..1864647

Molecular Weight (calculated)

36377.4 Da

IEP (calculated)

6.596

GRAVY (calculated)

-0.333

Length

331 amino acids

Sequence
(BLAST)

001: MTTEATVKAF SDSDSDSMKP NYTLSQTLSG HKRAISAVKF SSNGRLLASS AADKTLRTYG FTNSDSDSES LTLSPMQQYE GHEQGVSDLA FSSDSRFLVS
101: ASDDKTLRLW DVPTGSLIKT LHGHTNYVFC VNFNPQSNII VSGSFDETVR VWDVKSGKCL KVLPAHSDPV TAVDFNRDGS LIVSSSYDGL CRIWDASTGH
201: CMKTLIDDDN PPVSFVKFSP NAKFILVGTL DNTLRLWNYS TGKFLKTYTG HVNSKYCISS TFSTTNGKYI VGGSEENYIY LWDLQSRKIV QKLEGHSDAV
301: VSVSCHPTEN MIASGALGND NTVKIWTQQK D

Best Arabidopsis Sequence Match ( AT3G49660.1 )
(BLAST)

001: MAEEIPATAS FTPYVHSQTL TSHNRAVSSV KFSSDGRLLA SASADKTIRT YTINTINDPI AEPVQEFTGH ENGISDVAFS SDARFIVSAS DDKTLKLWDV
101: ETGSLIKTLI GHTNYAFCVN FNPQSNMIVS GSFDETVRIW DVTTGKCLKV LPAHSDPVTA VDFNRDGSLI VSSSYDGLCR IWDSGTGHCV KTLIDDENPP
201: VSFVRFSPNG KFILVGTLDN TLRLWNISSA KFLKTYTGHV NAQYCISSAF SVTNGKRIVS GSEDNCVHMW ELNSKKLLQK LEGHTETVMN VACHPTENLI
301: ASGSLDKTVR IWTQKKE

Arabidopsis Description

WDR5AWDR5a [Source:UniProtKB/TrEMBL;Acc:A0A178VK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.