CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033849_P002	Maize	extracellular, nucleus	97.81	97.81
TraesCS4D01G056800.1	Wheat	cytosol	89.34	89.06
TraesCS4B01G056500.1	Wheat	cytosol	89.66	88.54
TraesCS4A01G258000.1	Wheat	cytosol	89.34	88.24
Os03t0725400-02	Rice	cytosol	87.46	86.11
HORVU4Hr1G009500.1	Barley	cytosol, plastid	89.97	82.71
GSMUA_Achr2P08580_001	Banana	cytosol	68.65	77.11
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	74.61	70.62
VIT_07s0205g00150.t01	Wine grape	cytosol	67.4	68.69
PGSC0003DMT400078695	Potato	cytosol	67.4	68.47
Solyc02g091790.2.1	Tomato	cytosol, nucleus	67.08	68.15
KRH50874	Soybean	nucleus	68.65	66.57
AT3G49660.1	Thale cress	cytosol	64.89	65.3
KRH02239	Soybean	nucleus	66.77	64.35
CDX86957	Canola	cytosol	60.5	61.86
CDY00226	Canola	cytosol, nucleus, plastid	60.5	61.27
Bra019610.1-P	Field mustard	plastid	60.81	61.2
KXG36525	Sorghum	plastid	58.62	56.84
EES05216	Sorghum	cytosol	26.65	28.05
EER90141	Sorghum	plastid	28.53	26.53
EES18812	Sorghum	cytosol	32.92	21.92
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	25.08	20.1
KXG25821	Sorghum	cytosol	21.94	14.61
KXG37566	Sorghum	plastid	23.82	13.22
EES04226	Sorghum	nucleus	22.57	10.08
OQU91573	Sorghum	plastid	23.51	8.58
OQU87670	Sorghum	cytosol	20.69	7.93
KXG27434	Sorghum	cytosol	22.57	7.83

Protein Annotations

MapMan:12.3.3.2.3	Gene3D:2.130.10.10	EntrezGene:8060545	UniProt:C5WM28	ProteinID:EER90956.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0010228	GO:GO:0042393	GO:GO:0048188	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlants:OQU91075	ProteinID:OQU91075	ProteinID:OQU91075.1	ProteinID:OQU91076.1	ProteinID:OQU91077.1	PFAM:PF00400
PIRSF:PIRSF002394	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22847
PANTHER:PTHR22847:SF602	SMART:SM00320	EnsemblPlantsGene:SORBI_3001G107300	SUPFAM:SSF50978	unigene:Sbi.10277	UniParc:UPI0001A82476
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002463958.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:8280747..8286507

Molecular Weight (calculated)

34436.5 Da

IEP (calculated)

6.417

GRAVY (calculated)

-0.132

Length

319 amino acids

Sequence
(BLAST)

001: MAAPAADDAS ASPGYVLRST LEGHRRAVST VKFSPDGRLL ASASADKLLR VWSSSDLSPV AELAGHGEGV SDLSFSPDGR LLASASDDRT VRIWDLAVGG
101: GARLIKTLTG HTNYAFCVSF SPHGNVLASG SFDETVRVWE VRSGKCLRVL PAHSEPVTAV DFDREGDMIV SGSYDGLCRV WDSTTGHCVK TLIDDESPPV
201: SFAKFSPNGK FILAATLDST LRLWNFSAGK FLKTYTGHVN TKYCIPAAFS ITNGKYIVSG SEDKCVYLWD LQSRRIVQKL EGHTDTVIAV SCHPTENMIA
301: SGALDNDKTV KVWVQKEED

Best Arabidopsis Sequence Match ( AT3G49660.1 )
(BLAST)

001: MAEEIPATAS FTPYVHSQTL TSHNRAVSSV KFSSDGRLLA SASADKTIRT YTINTINDPI AEPVQEFTGH ENGISDVAFS SDARFIVSAS DDKTLKLWDV
101: ETGSLIKTLI GHTNYAFCVN FNPQSNMIVS GSFDETVRIW DVTTGKCLKV LPAHSDPVTA VDFNRDGSLI VSSSYDGLCR IWDSGTGHCV KTLIDDENPP
201: VSFVRFSPNG KFILVGTLDN TLRLWNISSA KFLKTYTGHV NAQYCISSAF SVTNGKRIVS GSEDNCVHMW ELNSKKLLQK LEGHTETVMN VACHPTENLI
301: ASGSLDKTVR IWTQKKE

Arabidopsis Description

WDR5AWDR5a [Source:UniProtKB/TrEMBL;Acc:A0A178VK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.