CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039211_P006	Maize	cytosol	96.66	93.16
Os10t0104500-01	Rice	cytosol	90.61	90.42
Os11t0594200-01	Rice	cytosol	89.98	89.79
TraesCS1A01G443600.1	Wheat	cytosol	88.31	89.05
TraesCS1B01G478100.1	Wheat	cytosol	87.89	88.45
TraesCS1D01G451700.1	Wheat	cytosol	87.68	88.42
HORVU1Hr1G095080.1	Barley	cytosol, plastid	86.85	82.7
GSMUA_Achr3P29050_001	Banana	nucleus	79.75	79.92
Solyc03g112530.2.1	Tomato	nucleus	77.24	76.92
PGSC0003DMT400046634	Potato	cytosol	77.24	76.92
VIT_13s0064g00360.t01	Wine grape	nucleus	76.2	76.52
KRH08668	Soybean	nucleus	75.57	75.42
KRH70275	Soybean	nucleus	75.57	75.42
AT5G52820.1	Thale cress	cytosol	71.82	72.73
Bra009201.1-P	Field mustard	nucleus	63.26	63.12
CDX98931	Canola	nucleus	62.63	62.5
CDX70097	Canola	cytosol	60.13	62.34
VIT_13s0064g00330.t01	Wine grape	extracellular	15.24	55.73
CDY08014	Canola	mitochondrion	10.44	49.02
CDX77842	Canola	cytosol, nucleus, peroxisome	9.39	45.45
OQU91075	Sorghum	cytosol	21.92	32.92
KXG36525	Sorghum	plastid	20.46	29.79
EER90141	Sorghum	plastid	17.33	24.2
EES05216	Sorghum	cytosol	14.4	22.77
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	17.54	21.11
KXG25821	Sorghum	cytosol	16.91	16.91
KXG37566	Sorghum	plastid	16.49	13.74
EES04226	Sorghum	nucleus	17.12	11.48
OQU87670	Sorghum	cytosol	16.91	9.74
KXG27434	Sorghum	cytosol	17.12	8.91
OQU91573	Sorghum	plastid	15.45	8.47

Protein Annotations

MapMan:17.1.2.2.1.12	Gene3D:2.130.10.10	EntrezGene:8065340	UniProt:C5YX28	EnsemblPlants:EES18812	ProteinID:EES18812
ProteinID:EES18812.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000027	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0005840	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:Gprotein_B	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	InterPro:NLE	PFAM:PF00400	PFAM:PF08154	PRINTS:PR00319
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19848	SMART:SM00320
EnsemblPlantsGene:SORBI_3009G258500	SUPFAM:SSF50978	unigene:Sbi.18932	UniParc:UPI0001A88904	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002440382.1	:	:

Description

hypothetical protein

Coordinates

chr9:+:59225242..59231539

Molecular Weight (calculated)

52938.3 Da

IEP (calculated)

8.607

GRAVY (calculated)

-0.268

Length

479 amino acids

Sequence
(BLAST)

001: MDTQPVLAPA IDASASVMCQ LLSPEGDPLG AALYLPQNVG TPQLQEIVNQ LLHNEEKLPY AFYVGDEELS VQLGAYMRQK NANVEVTLRI VCQPQALFRI
101: RPVNRCSATI AGHTEAVIAV SFSPDGKSLA SGSGDTNVRF WDLSTQTPLF TCKGHKNWVL CIAWSPDGKQ LVSGSKSGEL ILWDPKTGNQ LGTPLMGHRK
201: WITAVSWEPV HLQSPCRRFV SASKDGDARI WDVTTRKCII SLTGHTSSVT CVKWGGDGLI YTGSQDCLIK VWETSQGKLV KTLKGHGHWV NSLALSTEYV
301: LRTGAYDHTG KTFSTAEEMK EAALVRYKKM RGNAPERLVS GSDDFTMFLW EPTISKQPKA RMTGHQKLVN HVYFSPDGQW LASASFDKSV KLWNGITGKF
401: VAAFRGHVAD VYQISWSADS RLLLSGSKDS TLKIWDIRTH KLKMDLPGHA DEVYTVDWSP DGEKVASGGK DRVLKLWMN

Best Arabidopsis Sequence Match ( AT5G52820.1 )
(BLAST)

001: MTMMDTDEGK TVMCLLTDPE GTHLGSAMYI PQKAGPLQLT QLVNRFLDNE EMLPYSFYVS DEELLVPVGT YLEKNKVSVE KVLTIVYQQQ AVFRIRPVNR
101: CSQTIAGHAE AVLCVSFSPD GKQLASGSGD TTVRLWDLYT ETPLFTCKGH KNWVLTVAWS PDGKHLVSGS KSGEICCWNP KKGELEGSPL TGHKKWITGI
201: SWEPVHLSSP CRRFVTSSKD GDARIWDITL KKSIICLSGH TLAVTCVKWG GDGIIYTGSQ DCTIKMWETT QGKLIRELKG HGHWINSLAL STEYVLRTGA
301: FDHTGRQYPP NEEKQKALER YNKTKGDSPE RLVSGSDDFT MFLWEPSVSK QPKKRLTGHQ QLVNHVYFSP DGKWIASASF DKSVRLWNGI TGQFVTVFRG
401: HVGPVYQVSW SADSRLLLSG SKDSTLKIWE IRTKKLKQDL PGHADEVFAV DWSPDGEKVV SGGKDRVLKL WKG

Arabidopsis Description

NLE1NLE [Source:UniProtKB/TrEMBL;Acc:A0A178UNZ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.