Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012620_P025 | Maize | cytosol | 93.03 | 92.81 |
| TraesCS3D01G313800.1 | Wheat | cytosol | 79.09 | 79.47 |
| Os01t0780400-02 | Rice | cytosol | 79.57 | 79.0 |
| TraesCS3A01G317500.1 | Wheat | cytosol | 78.49 | 78.58 |
| TraesCS3B01G349000.2 | Wheat | cytosol | 78.12 | 78.22 |
| KRH21524 | Soybean | cytosol | 20.91 | 77.33 |
| HORVU3Hr1G076760.7 | Barley | cytosol, mitochondrion, nucleus | 77.76 | 67.05 |
| CDY54233 | Canola | golgi | 12.62 | 56.45 |
| VIT_00s0776g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus | 31.49 | 50.29 |
| KRH10790 | Soybean | cytosol | 44.47 | 44.85 |
| GSMUA_Achr1P08830_001 | Banana | cytosol | 51.44 | 44.21 |
| KRH20528 | Soybean | cytosol | 41.11 | 43.96 |
| KRH49977 | Soybean | cytosol | 34.86 | 42.34 |
| CDY34658 | Canola | mitochondrion | 37.98 | 41.25 |
| VIT_00s1406g00010.t01 | Wine grape | cytosol, mitochondrion, nucleus | 13.82 | 38.98 |
| KXG27434 | Sorghum | cytosol | 40.99 | 37.07 |
| Solyc02g078800.2.1 | Tomato | extracellular | 43.03 | 34.79 |
| CDY34846 | Canola | nucleus | 37.98 | 34.65 |
| OQU91573 | Sorghum | plastid | 35.1 | 33.41 |
| VIT_00s1397g00010.t01 | Wine grape | cytosol | 13.58 | 33.33 |
| AT1G11160.1 | Thale cress | cytosol | 39.66 | 32.32 |
| KRH21526 | Soybean | cytosol, peroxisome | 23.2 | 32.22 |
| Bra031445.1-P | Field mustard | cytosol | 42.55 | 31.55 |
| CDY03812 | Canola | cytosol | 42.55 | 31.52 |
| CDY52222 | Canola | cytosol | 42.31 | 31.37 |
| AT1G61210.1 | Thale cress | cytosol | 44.35 | 31.24 |
| CDY15006 | Canola | cytosol | 37.86 | 31.07 |
| EER90141 | Sorghum | plastid | 8.53 | 20.7 |
| OQU91075 | Sorghum | cytosol | 7.93 | 20.69 |
| KXG36525 | Sorghum | plastid | 8.17 | 20.67 |
| PGSC0003DMT400057760 | Potato | cytosol | 19.23 | 20.13 |
| EES05216 | Sorghum | cytosol | 6.37 | 17.49 |
| EES18812 | Sorghum | cytosol | 9.74 | 16.91 |
| KXG26924 | Sorghum | cytoskeleton, cytosol, nucleus | 8.05 | 16.83 |
| KXG25821 | Sorghum | cytosol | 9.13 | 15.87 |
| EES04226 | Sorghum | nucleus | 10.46 | 12.18 |
| KXG37566 | Sorghum | plastid | 7.45 | 10.78 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | UniProt:A0A1W0VZU9 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 |
| GO:GO:0005874 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0008352 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0051013 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 |
| HAMAP:MF_03022 | EnsemblPlants:OQU87670 | ProteinID:OQU87670 | ProteinID:OQU87670.1 | PFAM:PF00400 | PFAM:PF13925 |
| PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 |
| SMART:SM00320 | EnsemblPlantsGene:SORBI_3003G316700 | SUPFAM:SSF50978 | UniParc:UPI0009DC8968 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr3:+:64451826..64461029
Molecular Weight (calculated)
91176.4 Da
IEP (calculated)
8.054
GRAVY (calculated)
-0.306
Length
832 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPEKRGYEL QNFVAHDAEV RSLSIGKKSS RVFITGGNDR KVNLWAIGKQ TPLLTLSGHT SAVEAVQFDS AEVLVLAGSS NGSIKLWDLE EAKVVRSLAG
101: HRSSCTAVEF HPFGEFFASG SSDTDLKIWD IKKKGCIHTY KGHRGAIKTI RFTPDGRWVV TGGEDSIVKV WDLTAGKLLH DFKFHSGQIN CIDFHPQEFL
201: LATGSADRTV KFWDLETFEL IGSSGPEGTS VRSMVFHPDG KTLFCGLDQS LKVFSWEPVR CHDVVDMGWS NLADLSIYEG KLLGCSYHER RVGLWAADIS
301: LIGPYALGVL PKANFFAELV QSMDDNPVKP VDSTANSRPA LAMAHSKSSY KVKESGIAES RVRGSHLTPA TTDKVKKARS STIPRRPDSS LKSSVQGSTP
401: VRRMKLVDSP STNPKIMERN FGQRDISSAS RAARANNSAT AKKSNLTESA LVKDIYTTSQ AVPAPVVVPR DILEDKTVSN VRRGTGDTAA APDDFRTPFH
501: KRKPSLSGSA ADSDSSSVYT EPDVCSEGLS SLKFSFGLTP YYKKEEFGDV DNEGIAQITE KMDRTVLLDH SPQLNDDKSF ESPCSTTETA KVKYVRGVAV
601: PLGKTKSLVE RWEKRESSST DYSPQIGSCG DRASRNDNPP SHLAEPSTTY EKDLSTVDEV MVPVNLVRNH DEFINAVKLR LTKLEMMRHV FEQSGIKGAI
701: AAVAKLPDNA VQADVVSALK GKLDLFNLEI FSSFLPVLSG LLCSKTERHA TVSLEMLLDL IKIFGPVIHS TLSANLGVGV NIQAEQRLQR CTRCFNHLQK
801: IQQTLNPLIM RGGQAAQLAQ ELNLSLQDLV VI
101: HRSSCTAVEF HPFGEFFASG SSDTDLKIWD IKKKGCIHTY KGHRGAIKTI RFTPDGRWVV TGGEDSIVKV WDLTAGKLLH DFKFHSGQIN CIDFHPQEFL
201: LATGSADRTV KFWDLETFEL IGSSGPEGTS VRSMVFHPDG KTLFCGLDQS LKVFSWEPVR CHDVVDMGWS NLADLSIYEG KLLGCSYHER RVGLWAADIS
301: LIGPYALGVL PKANFFAELV QSMDDNPVKP VDSTANSRPA LAMAHSKSSY KVKESGIAES RVRGSHLTPA TTDKVKKARS STIPRRPDSS LKSSVQGSTP
401: VRRMKLVDSP STNPKIMERN FGQRDISSAS RAARANNSAT AKKSNLTESA LVKDIYTTSQ AVPAPVVVPR DILEDKTVSN VRRGTGDTAA APDDFRTPFH
501: KRKPSLSGSA ADSDSSSVYT EPDVCSEGLS SLKFSFGLTP YYKKEEFGDV DNEGIAQITE KMDRTVLLDH SPQLNDDKSF ESPCSTTETA KVKYVRGVAV
601: PLGKTKSLVE RWEKRESSST DYSPQIGSCG DRASRNDNPP SHLAEPSTTY EKDLSTVDEV MVPVNLVRNH DEFINAVKLR LTKLEMMRHV FEQSGIKGAI
701: AAVAKLPDNA VQADVVSALK GKLDLFNLEI FSSFLPVLSG LLCSKTERHA TVSLEMLLDL IKIFGPVIHS TLSANLGVGV NIQAEQRLQR CTRCFNHLQK
801: IQQTLNPLIM RGGQAAQLAQ ELNLSLQDLV VI
001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.