Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031445.1-P | Field mustard | cytosol | 77.14 | 81.19 |
| CDY03812 | Canola | cytosol | 76.97 | 80.94 |
| CDY52222 | Canola | cytosol | 76.88 | 80.93 |
| CDY15006 | Canola | cytosol | 67.06 | 78.11 |
| AT1G11160.1 | Thale cress | cytosol | 59.86 | 69.25 |
| VIT_00s0776g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus | 28.28 | 64.11 |
| KRH20528 | Soybean | cytosol | 38.1 | 57.84 |
| KRH49977 | Soybean | cytosol | 32.18 | 55.47 |
| VIT_00s1397g00010.t01 | Wine grape | cytosol | 14.23 | 49.56 |
| Solyc02g078800.2.1 | Tomato | extracellular | 40.22 | 46.16 |
| TraesCS3D01G313800.1 | Wheat | cytosol | 31.33 | 44.69 |
| TraesCS3A01G317500.1 | Wheat | cytosol | 31.33 | 44.52 |
| OQU87670 | Sorghum | cytosol | 31.24 | 44.35 |
| TraesCS3B01G349000.2 | Wheat | cytosol | 31.16 | 44.28 |
| Os01t0780400-02 | Rice | cytosol | 31.41 | 44.27 |
| Zm00001d012620_P025 | Maize | cytosol | 31.16 | 44.12 |
| GSMUA_Achr1P08830_001 | Banana | cytosol | 33.36 | 40.7 |
| AT5G08390.1 | Thale cress | cytosol | 28.45 | 40.05 |
| AT5G23430.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 28.37 | 40.02 |
| HORVU3Hr1G076760.7 | Barley | cytosol, mitochondrion, nucleus | 31.24 | 38.24 |
| PGSC0003DMT400057760 | Potato | cytosol | 21.93 | 32.58 |
| AT3G49660.1 | Thale cress | cytosol | 6.1 | 22.71 |
| AT2G43770.1 | Thale cress | cytosol | 6.18 | 21.28 |
| AT4G02730.1 | Thale cress | cytosol | 5.59 | 19.82 |
| AT5G64730.1 | Thale cress | cytosol | 4.66 | 18.39 |
| AT1G71840.1 | Thale cress | nucleus | 6.18 | 17.94 |
| AT5G52820.1 | Thale cress | cytosol | 6.44 | 16.07 |
| AT4G15900.1 | Thale cress | cytosol | 6.6 | 16.05 |
| AT3G16650.1 | Thale cress | cytosol | 6.44 | 15.87 |
| AT5G50230.1 | Thale cress | cytosol | 6.6 | 15.32 |
| AT5G13480.2 | Thale cress | nucleus | 6.69 | 12.02 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | EntrezGene:842414 | ProteinID:AEE33803.1 | ArrayExpress:AT1G61210 | EnsemblPlantsGene:AT1G61210 |
| RefSeq:AT1G61210 | TAIR:AT1G61210 | RefSeq:AT1G61210-TAIR-G | EnsemblPlants:AT1G61210.1 | TAIR:AT1G61210.1 | Unigene:At.23052 |
| UniProt:F4HTH8 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0006950 |
| GO:GO:0008017 | GO:GO:0008150 | GO:GO:0008352 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 |
| GO:GO:0009737 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 | GO:GO:0080008 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 | HAMAP:MF_03022 | RefSeq:NP_176316.4 |
| PFAM:PF00400 | PFAM:PF13925 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0007095 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0025022 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI0001E92A7B | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4HTH8]
Coordinates
chr1:+:22564495..22571907
Molecular Weight (calculated)
129182.0 Da
IEP (calculated)
8.829
GRAVY (calculated)
-0.451
Length
1181 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL FITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSVAFDSAE VLVLAGASSG VIKLWDVEEA KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDSTGGNSAV AHKSGSLSTP ATSTGQAGDN KSLVVHSVVP RDSDIGKDSS
0401: DSGKESITFS KTKPGMLLRP AYVRKTPTKF DETKKQSVAV GYLKKSGLDG EKKLDTETAF DSEMSGRNPY DADDSIIKSI TNKFEQALLP ESPTDEAKCM
0501: LLKPPRVQRS PSTKYNEARW ATSTDSGALD SKKNGLESSR DMDLPTGLRD DRGSNPCEED IENKSISSRS ERVLSPEKAG DELKSLESPG GSKESKSVKV
0601: VRGVKVVSGR TRSLVERFER GEKITHSEDK AASATVVHSS NSVEEEPLTA SVQTVSMMPT QVMPVKLDQA TNSTTVDVPV LSTRRTKSTP VRVMPVVLGR
0701: DTSMATDTPP VTSTRPDRTS ATNLTSDVSG VTSKRQTRTS PAPVMPMILN QTTKMKSDEP SITSTWPDRT SATDLTSDVS GVISSRQTRT SPAPVMPMKL
0801: NQKTKIKSDE PPITSTRPDR PSATNLTSDE SPVTSTRQAK TSPAPVTPVI LNQRQTTNMK SDEPPVISTR PLRTSSARVM PVILNQASTT YDERPLSSSR
0901: SARTSPARIM PMKLNQADNM PSYEPPVALT RSARNSPARV IPVKLNQATN VTADASHIRS RQRFSPTQTL ATPAVFDQVT DMTLDETTKT QQSSDILTQK
1001: EEPQISGRED DGDIWEILMR THSEVLNTLQ SRLTKLQIVR HFWERSDIKG AIAALRKLSD HSVQADVINI LTDKTEILTL DLFSQLAPVL TGLLGSKTER
1101: PVNVSLEMLL KLVAVFGTVI QSTVSARRVV GVDLHAEERL QICQSCSAEL QKVQKILPLL TRRGGLIARK AQELNLVLQT P
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDSTGGNSAV AHKSGSLSTP ATSTGQAGDN KSLVVHSVVP RDSDIGKDSS
0401: DSGKESITFS KTKPGMLLRP AYVRKTPTKF DETKKQSVAV GYLKKSGLDG EKKLDTETAF DSEMSGRNPY DADDSIIKSI TNKFEQALLP ESPTDEAKCM
0501: LLKPPRVQRS PSTKYNEARW ATSTDSGALD SKKNGLESSR DMDLPTGLRD DRGSNPCEED IENKSISSRS ERVLSPEKAG DELKSLESPG GSKESKSVKV
0601: VRGVKVVSGR TRSLVERFER GEKITHSEDK AASATVVHSS NSVEEEPLTA SVQTVSMMPT QVMPVKLDQA TNSTTVDVPV LSTRRTKSTP VRVMPVVLGR
0701: DTSMATDTPP VTSTRPDRTS ATNLTSDVSG VTSKRQTRTS PAPVMPMILN QTTKMKSDEP SITSTWPDRT SATDLTSDVS GVISSRQTRT SPAPVMPMKL
0801: NQKTKIKSDE PPITSTRPDR PSATNLTSDE SPVTSTRQAK TSPAPVTPVI LNQRQTTNMK SDEPPVISTR PLRTSSARVM PVILNQASTT YDERPLSSSR
0901: SARTSPARIM PMKLNQADNM PSYEPPVALT RSARNSPARV IPVKLNQATN VTADASHIRS RQRFSPTQTL ATPAVFDQVT DMTLDETTKT QQSSDILTQK
1001: EEPQISGRED DGDIWEILMR THSEVLNTLQ SRLTKLQIVR HFWERSDIKG AIAALRKLSD HSVQADVINI LTDKTEILTL DLFSQLAPVL TGLLGSKTER
1101: PVNVSLEMLL KLVAVFGTVI QSTVSARRVV GVDLHAEERL QICQSCSAEL QKVQKILPLL TRRGGLIARK AQELNLVLQT P
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.