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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY60225 Canola cytosol 84.74 85.15
Bra005990.1-P Field mustard cytosol 85.94 85.02
CDX81101 Canola cytosol 85.22 85.02
AT5G23430.1 Thale cress cytosol, mitochondrion, nucleus, plastid 79.86 80.05
VIT_10s0071g01150.t01 Wine grape cytosol 60.31 63.49
KRG93160 Soybean cytosol 56.73 62.71
GSMUA_Achr3P27210_001 Banana golgi 35.16 62.37
KRH56498 Soybean cytosol 56.38 62.32
Solyc02g021360.2.1 Tomato cytosol 55.54 58.4
PGSC0003DMT400065114 Potato cytosol 53.04 54.87
Solyc04g008720.2.1 Tomato cytosol 52.92 54.81
GSMUA_Achr4P05370_001 Banana golgi, mitochondrion 51.73 54.73
KXG27434 Sorghum cytosol 51.97 47.39
Zm00001d026621_P006 Maize cytosol 51.01 47.03
Zm00001d001828_P033 Maize cytosol 51.49 46.85
TraesCS2D01G561900.1 Wheat cytosol 51.37 46.59
TraesCS2A01G592600.1 Wheat cytosol 51.25 46.49
TraesCS2B01G591600.2 Wheat cytosol 50.66 46.35
Os04t0677700-00 Rice cytosol 47.32 44.61
GSMUA_Achr9P23740_001 Banana golgi 51.49 41.22
AT1G11160.1 Thale cress cytosol 38.98 32.03
AT1G61210.1 Thale cress cytosol 40.05 28.45
AT3G49660.1 Thale cress cytosol 9.06 23.97
AT4G02730.1 Thale cress cytosol 8.46 21.32
AT2G43770.1 Thale cress cytosol 8.7 21.28
AT1G71840.1 Thale cress nucleus 8.94 18.43
AT5G64730.1 Thale cress cytosol 6.2 17.39
AT5G52820.1 Thale cress cytosol 9.18 16.28
AT5G50230.1 Thale cress cytosol 9.06 14.93
AT4G15900.1 Thale cress cytosol 8.34 14.4
AT3G16650.1 Thale cress cytosol 7.99 13.99
AT5G13480.2 Thale cress nucleus 10.49 13.39
Protein Annotations
MapMan:13.4.4.2.2Gene3D:2.130.10.10EntrezGene:830737ProteinID:AED91294.1ArrayExpress:AT5G08390EnsemblPlantsGene:AT5G08390
RefSeq:AT5G08390TAIR:AT5G08390RefSeq:AT5G08390-TAIR-GEnsemblPlants:AT5G08390.1TAIR:AT5G08390.1Unigene:At.72630
UniProt:F4KB17InterPro:G-protein_beta_WD-40_repGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005856GO:GO:0005874GO:GO:0008017
GO:GO:0008150GO:GO:0008352GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016043
GO:GO:0051013GO:GO:0080008InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:Katanin_C-terminal
InterPro:Katanin_bsu1HAMAP:MF_03022RefSeq:NP_568194.2PFAM:PF00400PFAM:PF13925PO:PO:0000013
PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PRINTS:PR00320
ScanProsite:PS00678PFscan:PS50082PFscan:PS50294PANTHER:PTHR19845SMART:SM00320SUPFAM:SSF50978
UniParc:UPI0001505839InterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeatInterPro:WD40_repeat_CSInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sf
SEG:seg:::::
Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4KB17]
Coordinates
chr5:+:2700959..2707273
Molecular Weight (calculated)
91612.0 Da
IEP (calculated)
8.224
GRAVY (calculated)
-0.443
Length
839 amino acids
Sequence
(BLAST)
001: MNTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EGLVAAGAAS GTIKLWDLEE AKVVRTLTGH
101: RSNCVSVNFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWIVS GGEDNVVKVW DLTAGKLLHE FKSHEGKIQS LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSGGTETTGV RCLTFNPDGK SVLCGLQESL KIFSWEPIRC HDGVDVGWSN LSDMNVHEGK LLGCSYNQNC VGVWVVDLSR
301: TEPMSGGATQ SNSHPEKTSG SGRDQAGLND NSSKVILGKL PGSQKVDPLL KETKSLGKLS VSQNSDPLPK DTKSTGRSSV SQSSDPLVKE PKPLGRFSAT
401: HSSDTVKESR TLSSTGSVSD SPHRVTLTSA PKSASGISTV VPNAAASKRN FGKANPKANP PVVNKEDYFP VIVPRTEPII EQASESRAEL DIIGRTMPYS
501: LQSKAADSRR LSSSRNEPDL PTSSLLERSQ SQPIEPITLQ DGNTYPSDEG GSWDTAERTN KESKCRVFGR FNSRSLVRSP PRNHDENSDL ISYNANRDSS
601: PTESRKGGRL HSLVLNRERR GRFSNFEGPV SSSSGGNMTA PNSRPSNMLK QRGNHVPVDQ GITSASEEDI VADIMGQHDQ FVSSMHSRLA KLQVVRRYWE
701: RNDIKNSISS IEKMADNAVI ADVLLIVNER PEILTLDTCT SLLPLLTALL GSNMDSHLSV CLDLLLKLVR MYGSQIYSSL SAPSSVGVDI EAEQRMERYS
801: CCFVEFEKIK ACLPSLARRG NLVAKTLHEL NLTFQEVSS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.