Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G561900.1 | Wheat | cytosol | 97.82 | 96.97 |
| TraesCS2A01G592600.1 | Wheat | cytosol | 97.49 | 96.65 |
| KXG27434 | Sorghum | cytosol | 80.15 | 79.89 |
| Os04t0677700-00 | Rice | cytosol | 76.44 | 78.76 |
| Zm00001d026621_P006 | Maize | cytosol | 77.86 | 78.46 |
| Zm00001d001828_P033 | Maize | cytosol | 78.52 | 78.09 |
| GSMUA_Achr3P27210_001 | Banana | golgi | 33.7 | 65.33 |
| KRG93160 | Soybean | cytosol | 49.84 | 60.21 |
| KRH56498 | Soybean | cytosol | 49.4 | 59.68 |
| VIT_10s0071g01150.t01 | Wine grape | cytosol | 51.58 | 59.35 |
| GSMUA_Achr4P05370_001 | Banana | golgi, mitochondrion | 50.27 | 58.13 |
| Solyc02g021360.2.1 | Tomato | cytosol | 48.75 | 56.02 |
| PGSC0003DMT400065114 | Potato | cytosol | 46.24 | 52.28 |
| Solyc04g008720.2.1 | Tomato | cytosol | 45.91 | 51.98 |
| AT5G23430.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 46.67 | 51.13 |
| CDX88026 | Canola | cytosol | 45.91 | 50.78 |
| AT5G08390.1 | Thale cress | cytosol | 46.35 | 50.66 |
| CDY60225 | Canola | cytosol | 46.02 | 50.54 |
| CDX81101 | Canola | cytosol | 46.13 | 50.3 |
| Bra005990.1-P | Field mustard | cytosol | 46.46 | 50.24 |
| CDX80363 | Canola | cytosol | 46.56 | 50.24 |
| Bra009683.1-P | Field mustard | cytosol | 46.24 | 46.8 |
| GSMUA_Achr9P23740_001 | Banana | golgi | 51.15 | 44.75 |
| TraesCS1B01G181100.1 | Wheat | cytosol | 37.84 | 42.11 |
| TraesCS3B01G349000.2 | Wheat | cytosol | 36.75 | 40.55 |
| TraesCS7B01G406900.1 | Wheat | cytosol, plastid | 8.4 | 22.25 |
| TraesCS2B01G224500.1 | Wheat | plastid | 7.85 | 21.69 |
| TraesCS4B01G056500.1 | Wheat | cytosol | 7.63 | 21.67 |
| TraesCS1B01G374800.1 | Wheat | cytosol | 7.96 | 18.53 |
| TraesCS6B01G275200.2 | Wheat | cytosol | 5.89 | 18.0 |
| TraesCS1B01G478100.1 | Wheat | cytosol | 8.83 | 17.02 |
| TraesCS2B01G148600.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 8.18 | 15.46 |
| TraesCS3B01G205300.1 | Wheat | cytosol | 8.07 | 15.45 |
| TraesCS5B01G292800.1 | Wheat | nucleus | 9.38 | 12.06 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0008017 |
| GO:GO:0008150 | GO:GO:0008352 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 | HAMAP:MF_03022 | PFAM:PF00400 |
| PFAM:PF13925 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19845 |
| SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS2B01G591600 | EnsemblPlants:TraesCS2B01G591600.2 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | TIGR:cd00200 | SEG:seg | : |
Description
No Description!
Coordinates
chr2B:-:776976449..776983884
Molecular Weight (calculated)
99518.2 Da
IEP (calculated)
7.835
GRAVY (calculated)
-0.399
Length
917 amino acids
Sequence
(BLAST)
(BLAST)
001: FAVEEFVAHA SNVNCLKIGR KTSRVLVTGG EDHKVNLWAI GKPNSISSLP GHTSAVESVA FDSTEVFVAA GAASGTVKLW DLEEAKIVRT LTGHRSNCMS
101: VDFHPFGEFF ASGSLDTNLK IWDIRRKGCI HTYKGHTRGV NAIRFTPDGR WVVSGGEDSA VKIWDLTAGK LLHEFKSHEG QIQCIDFHPH EFLLATGSAD
201: KTVKFWDLET FELIGSTGPE MTGVRSMTFN PDGRSLLCGL HESLKVFSWE PIRCHDTVDV GWSRLSDLNV HEGKLLGCSS NQSCVGIWVV DLTRLEPHAS
301: GTSALLNGRS ELKASSGGTM PLQNDSGSRA NIGRSSALQN SENNLKASTG RLSVSQNSDS APKEIKPTAS SGMVPSTPQR VGTGSSTRTA GNSTFASGGT
401: TLKRSSLKSN STSNLHNFSK TDVVPAAVII PRTSSGADLG TGSRSYAADV PPVLSKASRR AELATDPRTE SADVAPAVVP RTSSRMEMAS DSAPDAVCRV
501: GRRLESAADS RKESADAAPV VPRATSRMEM ASDSVPVLPK AGRRFESATD SRKESTDEAP VIVPRATSRM EMASDSRREP SAGRVSPFRI QSRYAEPRKS
601: TNVKVDADKI DVGSKDTESD DLTCQIFLPR RNGAVQTVIP EETREDVKHG TVYRSGFSGS AESNTSHRND NYVPRMRKPR DNCYIEVSRA GRTRSIVPNW
701: EGRDQSPSHE EPTTSNSALG APRGRMYSSR GSSQAAETNI VTSEEDVLSV LIEEHDLFLS STRSRLTKLQ ILHQMWQRND IRGVFSALEK MSDHAVCADM
801: ASVLMEKSEA ITLDLCTCIL PVLADLLESK TDRHLAVSLE LVVKLVRTFG PVIHSTVSVG PSSVGVDLEA EQRRERCNLC FIELEKVKNK LPSLMRRKGA
901: ASNTAQELSL VFQEIMS
101: VDFHPFGEFF ASGSLDTNLK IWDIRRKGCI HTYKGHTRGV NAIRFTPDGR WVVSGGEDSA VKIWDLTAGK LLHEFKSHEG QIQCIDFHPH EFLLATGSAD
201: KTVKFWDLET FELIGSTGPE MTGVRSMTFN PDGRSLLCGL HESLKVFSWE PIRCHDTVDV GWSRLSDLNV HEGKLLGCSS NQSCVGIWVV DLTRLEPHAS
301: GTSALLNGRS ELKASSGGTM PLQNDSGSRA NIGRSSALQN SENNLKASTG RLSVSQNSDS APKEIKPTAS SGMVPSTPQR VGTGSSTRTA GNSTFASGGT
401: TLKRSSLKSN STSNLHNFSK TDVVPAAVII PRTSSGADLG TGSRSYAADV PPVLSKASRR AELATDPRTE SADVAPAVVP RTSSRMEMAS DSAPDAVCRV
501: GRRLESAADS RKESADAAPV VPRATSRMEM ASDSVPVLPK AGRRFESATD SRKESTDEAP VIVPRATSRM EMASDSRREP SAGRVSPFRI QSRYAEPRKS
601: TNVKVDADKI DVGSKDTESD DLTCQIFLPR RNGAVQTVIP EETREDVKHG TVYRSGFSGS AESNTSHRND NYVPRMRKPR DNCYIEVSRA GRTRSIVPNW
701: EGRDQSPSHE EPTTSNSALG APRGRMYSSR GSSQAAETNI VTSEEDVLSV LIEEHDLFLS STRSRLTKLQ ILHQMWQRND IRGVFSALEK MSDHAVCADM
801: ASVLMEKSEA ITLDLCTCIL PVLADLLESK TDRHLAVSLE LVVKLVRTFG PVIHSTVSVG PSSVGVDLEA EQRRERCNLC FIELEKVKNK LPSLMRRKGA
901: ASNTAQELSL VFQEIMS
001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.