Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G164300.1 | Wheat | cytosol | 94.9 | 96.07 |
| TraesCS1D01G161300.1 | Wheat | cytosol | 92.6 | 95.38 |
| HORVU1Hr1G061600.22 | Barley | cytosol | 88.83 | 90.15 |
| Os10t0494800-01 | Rice | cytosol | 67.35 | 63.43 |
| OQU91573 | Sorghum | plastid | 62.86 | 59.27 |
| Zm00001d032598_P023 | Maize | cytosol, plasma membrane, plastid | 59.95 | 53.52 |
| TraesCS2B01G591600.2 | Wheat | cytosol | 42.11 | 37.84 |
| TraesCS3B01G349000.2 | Wheat | cytosol | 37.74 | 37.42 |
| Zm00001d033713_P002 | Maize | cytosol, extracellular, plastid | 22.33 | 36.73 |
| TraesCS2B01G224500.1 | Wheat | plastid | 8.86 | 21.99 |
| TraesCS4B01G056500.1 | Wheat | cytosol | 8.37 | 21.36 |
| TraesCS7B01G406900.1 | Wheat | cytosol, plastid | 8.5 | 20.23 |
| TraesCS1B01G374800.1 | Wheat | cytosol | 8.74 | 18.27 |
| TraesCS6B01G275200.2 | Wheat | cytosol | 6.55 | 18.0 |
| TraesCS1B01G478100.1 | Wheat | cytosol | 9.34 | 16.18 |
| TraesCS3B01G205300.1 | Wheat | cytosol | 8.98 | 15.45 |
| TraesCS2B01G148600.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 8.62 | 14.64 |
| TraesCS5B01G292800.1 | Wheat | nucleus | 9.71 | 11.22 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0008017 |
| GO:GO:0008150 | GO:GO:0008352 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 | HAMAP:MF_03022 | PFAM:PF00400 |
| PFAM:PF13925 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19845 |
| PANTHER:PTHR19845:SF14 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS1B01G181100 | EnsemblPlants:TraesCS1B01G181100.1 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | TIGR:cd00200 | SEG:seg |
Description
No Description!
Coordinates
chr1B:+:327831608..327840548
Molecular Weight (calculated)
90412.2 Da
IEP (calculated)
7.530
GRAVY (calculated)
-0.243
Length
824 amino acids
Sequence
(BLAST)
(BLAST)
001: MATKRAYKLQ EFVAHASDVT CAKFGKRTLR TFITGGEDQK VNLWAVGKPS AVLSLSGHTS PVESLSFDSS EVMIGAGAAT GTIKIWDIEE AKVVRTFTGH
101: RSNCASLDSH PFGEFFASES SDTNMKIWDM RKKRCIHTYQ GHTGRIDVLR FTPDGRWIVS GGADSSVKIW DLTAGKLLHD FRLHEGPINC LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSSGPENCRE YYMPASVVRS MTFNSDGKAL FCGLHESLKV LSWEPIICHD AVDVGWSTLA DLNVQEGKLL GCSYNQSCVG
301: IWVVDLMKFD PYTVGSAEAF WNGTGNGPLQ ADNTISSMLG SLSISRRPEA NETSSTLLKR PMSASKEASV PASSAVRKRL SKAPGINNLR LTRAESAPLL
401: SPRVRLKPNS TDHQKRHIAN VRFKVDLSTS ARMIAGNSQA SAAPTYIPRS NIFACSSEGS TFMPGVVPRH VSKVDAGSSL SEAAAAAIKP EQLLKGHLAV
501: DHDKDVHRCV FQSKPITSKT PQRKFIRETS SDGDINCFGP LCTESVQSNK VDDWYDVCGF EETKSAVGRN PQFVNVNRTV VFGSSQLVES SESSIMQNRG
601: TGHLCASYQR SEYAPTSDGL RQSSFAGERI ASANDDDLIA DLMQNHQEFI HGVKLRLTKL ELVYRCWQNN DIKGSVSAMR RMSDHAVTAD IINVLIMEKS
701: TKYITLDVCT SVLPLASNLL ESGYDRHLNV ALATILKLVK SFSASIFSTL SSAPPVGVDL EAEHRLERCS SCFQELEEIN ASLISLTRRE GNVGRSAREL
801: SLLLQDIFKT PSRNAEISPF SFCT
101: RSNCASLDSH PFGEFFASES SDTNMKIWDM RKKRCIHTYQ GHTGRIDVLR FTPDGRWIVS GGADSSVKIW DLTAGKLLHD FRLHEGPINC LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSSGPENCRE YYMPASVVRS MTFNSDGKAL FCGLHESLKV LSWEPIICHD AVDVGWSTLA DLNVQEGKLL GCSYNQSCVG
301: IWVVDLMKFD PYTVGSAEAF WNGTGNGPLQ ADNTISSMLG SLSISRRPEA NETSSTLLKR PMSASKEASV PASSAVRKRL SKAPGINNLR LTRAESAPLL
401: SPRVRLKPNS TDHQKRHIAN VRFKVDLSTS ARMIAGNSQA SAAPTYIPRS NIFACSSEGS TFMPGVVPRH VSKVDAGSSL SEAAAAAIKP EQLLKGHLAV
501: DHDKDVHRCV FQSKPITSKT PQRKFIRETS SDGDINCFGP LCTESVQSNK VDDWYDVCGF EETKSAVGRN PQFVNVNRTV VFGSSQLVES SESSIMQNRG
601: TGHLCASYQR SEYAPTSDGL RQSSFAGERI ASANDDDLIA DLMQNHQEFI HGVKLRLTKL ELVYRCWQNN DIKGSVSAMR RMSDHAVTAD IINVLIMEKS
701: TKYITLDVCT SVLPLASNLL ESGYDRHLNV ALATILKLVK SFSASIFSTL SSAPPVGVDL EAEHRLERCS SCFQELEEIN ASLISLTRRE GNVGRSAREL
801: SLLLQDIFKT PSRNAEISPF SFCT
0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL FITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSVAFDSAE VLVLAGASSG VIKLWDVEEA KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDCGNSAVAH KSGSLSTPAT STGQAGDNKS LVVHSVVPRD SDIGKDSSDS
0401: GKESITFSKT KPGMLLRPAY VRKTPTKFDE TKKQSVAVGY LKKSGLDGEK KLDTETAFDS EMSGRNPYDA DDSIIKSITN KFEQALLPES PTDEAKCMLL
0501: KPPRVQRSPS TKYNEARWAT STDSGALDSK KNGLESSRDM DLPTGLRDDR GSNPCEEDIE NKSISSRSER VLSPEKAGDE LKSLESPGGS KESKSVKVVR
0601: GVKVVSGRTR SLVERFERGE KITHSEDKAA SATVVHSSNS VEEEPLTASV QTVSMMPTQV MPVKLDQATN STTVDVPVLS TRRTKSTPVR VMPVVLGRDT
0701: SMATDTPPVT STRPDRTSAT NLTSDESPVT STRQAKTSPA PVTPVILNQR QTTNMKSDEP PVISTRPLRT SSARVMPVIL NQASTTYDER PLSSSRSART
0801: SPARIMPMKL NQADNMPSYE PPVALTRSAR NSPARVIPVK LNQATNVTAD ASHIRSRQRF SPTQTLATPA VFDQVTDMTL DETTKTQQSS DILTQKEEPQ
0901: ISGREDDGDI WEILMRTHSE VLNTLQSRLT KLQIVRHFWE RSDIKGAIAA LRKLSDHSVQ ADVINILTDK TEILTLDLFS QLAPVLTGLL GSKTERPVNV
1001: SLEMLLKLVA VFGTVIQSTV SARRVVGVDL HAEERLQICQ SCSAELQKVQ KILPLLTRRG GLIARKAQEL NLVLQTP
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDCGNSAVAH KSGSLSTPAT STGQAGDNKS LVVHSVVPRD SDIGKDSSDS
0401: GKESITFSKT KPGMLLRPAY VRKTPTKFDE TKKQSVAVGY LKKSGLDGEK KLDTETAFDS EMSGRNPYDA DDSIIKSITN KFEQALLPES PTDEAKCMLL
0501: KPPRVQRSPS TKYNEARWAT STDSGALDSK KNGLESSRDM DLPTGLRDDR GSNPCEEDIE NKSISSRSER VLSPEKAGDE LKSLESPGGS KESKSVKVVR
0601: GVKVVSGRTR SLVERFERGE KITHSEDKAA SATVVHSSNS VEEEPLTASV QTVSMMPTQV MPVKLDQATN STTVDVPVLS TRRTKSTPVR VMPVVLGRDT
0701: SMATDTPPVT STRPDRTSAT NLTSDESPVT STRQAKTSPA PVTPVILNQR QTTNMKSDEP PVISTRPLRT SSARVMPVIL NQASTTYDER PLSSSRSART
0801: SPARIMPMKL NQADNMPSYE PPVALTRSAR NSPARVIPVK LNQATNVTAD ASHIRSRQRF SPTQTLATPA VFDQVTDMTL DETTKTQQSS DILTQKEEPQ
0901: ISGREDDGDI WEILMRTHSE VLNTLQSRLT KLQIVRHFWE RSDIKGAIAA LRKLSDHSVQ ADVINILTDK TEILTLDLFS QLAPVLTGLL GSKTERPVNV
1001: SLEMLLKLVA VFGTVIQSTV SARRVVGVDL HAEERLQICQ SCSAELQKVQ KILPLLTRRG GLIARKAQEL NLVLQTP
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4HTH8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.