Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G164300.1 | Wheat | cytosol | 95.88 | 94.23 |
| TraesCS1B01G181100.1 | Wheat | cytosol | 95.38 | 92.6 |
| TraesCS1D01G151100.1 | Wheat | cytosol | 73.0 | 91.97 |
| HORVU1Hr1G061600.22 | Barley | cytosol | 89.38 | 88.05 |
| Os10t0494800-01 | Rice | cytosol | 69.5 | 63.54 |
| OQU91573 | Sorghum | plastid | 65.0 | 59.5 |
| Zm00001d032598_P023 | Maize | cytosol, plasma membrane, plastid | 61.75 | 53.52 |
| TraesCS2D01G561900.1 | Wheat | cytosol | 44.62 | 38.59 |
| TraesCS3D01G313800.1 | Wheat | cytosol | 39.5 | 38.16 |
| Zm00001d033713_P002 | Maize | cytosol, extracellular, plastid | 23.5 | 37.52 |
| TraesCS4D01G056800.1 | Wheat | cytosol | 8.88 | 22.19 |
| TraesCS2D01G204900.1 | Wheat | cytosol, plastid | 9.75 | 21.61 |
| TraesCS7D01G486800.1 | Wheat | cytosol, plastid | 8.88 | 20.52 |
| TraesCS1D01G363000.1 | Wheat | cytosol | 9.0 | 18.27 |
| TraesCS6D01G232000.1 | Wheat | cytosol | 6.75 | 18.0 |
| TraesCS2D01G129200.1 | Wheat | cytoskeleton, cytosol, nucleus | 8.62 | 17.42 |
| TraesCS1D01G451700.1 | Wheat | cytosol | 9.5 | 16.0 |
| TraesCS3D01G181100.1 | Wheat | cytosol | 9.12 | 15.24 |
| TraesCS5D01G394200.1 | Wheat | cytosol | 8.25 | 12.79 |
| TraesCS5D01G300900.1 | Wheat | nucleus | 10.0 | 11.22 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0008017 |
| GO:GO:0008150 | GO:GO:0008352 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 | HAMAP:MF_03022 | PFAM:PF00400 |
| PFAM:PF13925 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19845 |
| PANTHER:PTHR19845:SF14 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS1D01G161300 | EnsemblPlants:TraesCS1D01G161300.1 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | TIGR:cd00200 | SEG:seg |
Description
No Description!
Coordinates
chr1D:+:228294170..228299971
Molecular Weight (calculated)
87783.2 Da
IEP (calculated)
8.075
GRAVY (calculated)
-0.245
Length
800 amino acids
Sequence
(BLAST)
(BLAST)
001: MATKRAYKLQ EFVAHASDVT CAKFGKRTSR TLITGGEDQK VNLWAVGKPS AVLSLSGHTS PVESLSFDSS EVMIGAGAAT GTIKIWDIKE AKVVRTFTGH
101: RSNCASLDSH PFGEFFASGS SDTNMKIWDM RKKRCIHTYQ GHTGRIDVLR FTPDGRWIVS GGADSSVKIW DLTAGKLLHD FRLHEGPINC LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSSGPENYRE YYMPASVVRS MTFNSDGKAL FCGLHENLKV LSWEPIICHD AVDVGWSTLA DLNVQEGKLL GCSYNQSCVG
301: IWVVDLMKFD PYTVGSAEAF WNGTGNGPLQ ADNSISSMLG SLSISRRPEA NETPSSTLLK RPMSMSKETS VPVSSAVRKR LSKAPGINNL RLTRAESAPL
401: LSPRVRLKPN STDHQKRHIA NVRFKVDLST SARMIAGNSQ ASAAPTYITR SNIFACSSEG SAFVPGVVPR HVSKVDAGSN LSEAAAADLP GHLAVDHDKD
501: VHRCIFQSKP ITSKTPQRKF IRETSSNGDI NCFGPLCTES VQSNKVDDWY DVCGFEETKS AVGRNPQFVN VNRAVVFGSS QLVDRGTGHL CASYERSEYA
601: PTSDGLRQSS FAGERSASAN DDDLIADLMQ NHQEFIHGVK SRLTKLELVY RCWQNNDIKG SVSAMRRMSD HAVTADIINV LIMEKSTKYI TLDICASVLP
701: LASNLLESGY DRHLNVALAM ILNLVKSFRA SIFSTLSSTP PACVDLEAEH RLERCSICFQ ELEKINASLI SLTRREGKVG RSARELSLLL QDIFKTPSSV
101: RSNCASLDSH PFGEFFASGS SDTNMKIWDM RKKRCIHTYQ GHTGRIDVLR FTPDGRWIVS GGADSSVKIW DLTAGKLLHD FRLHEGPINC LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSSGPENYRE YYMPASVVRS MTFNSDGKAL FCGLHENLKV LSWEPIICHD AVDVGWSTLA DLNVQEGKLL GCSYNQSCVG
301: IWVVDLMKFD PYTVGSAEAF WNGTGNGPLQ ADNSISSMLG SLSISRRPEA NETPSSTLLK RPMSMSKETS VPVSSAVRKR LSKAPGINNL RLTRAESAPL
401: LSPRVRLKPN STDHQKRHIA NVRFKVDLST SARMIAGNSQ ASAAPTYITR SNIFACSSEG SAFVPGVVPR HVSKVDAGSN LSEAAAADLP GHLAVDHDKD
501: VHRCIFQSKP ITSKTPQRKF IRETSSNGDI NCFGPLCTES VQSNKVDDWY DVCGFEETKS AVGRNPQFVN VNRAVVFGSS QLVDRGTGHL CASYERSEYA
601: PTSDGLRQSS FAGERSASAN DDDLIADLMQ NHQEFIHGVK SRLTKLELVY RCWQNNDIKG SVSAMRRMSD HAVTADIINV LIMEKSTKYI TLDICASVLP
701: LASNLLESGY DRHLNVALAM ILNLVKSFRA SIFSTLSSTP PACVDLEAEH RLERCSICFQ ELEKINASLI SLTRREGKVG RSARELSLLL QDIFKTPSSV
0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL FITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSVAFDSAE VLVLAGASSG VIKLWDVEEA KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDCGNSAVAH KSGSLSTPAT STGQAGDNKS LVVHSVVPRD SDIGKDSSDS
0401: GKESITFSKT KPGMLLRPAY VRKTPTKFDE TKKQSVAVGY LKKSGLDGEK KLDTETAFDS EMSGRNPYDA DDSIIKSITN KFEQALLPES PTDEAKCMLL
0501: KPPRVQRSPS TKYNEARWAT STDSGALDSK KNGLESSRDM DLPTGLRDDR GSNPCEEDIE NKSISSRSER VLSPEKAGDE LKSLESPGGS KESKSVKVVR
0601: GVKVVSGRTR SLVERFERGE KITHSEDKAA SATVVHSSNS VEEEPLTASV QTVSMMPTQV MPVKLDQATN STTVDVPVLS TRRTKSTPVR VMPVVLGRDT
0701: SMATDTPPVT STRPDRTSAT NLTSDESPVT STRQAKTSPA PVTPVILNQR QTTNMKSDEP PVISTRPLRT SSARVMPVIL NQASTTYDER PLSSSRSART
0801: SPARIMPMKL NQADNMPSYE PPVALTRSAR NSPARVIPVK LNQATNVTAD ASHIRSRQRF SPTQTLATPA VFDQVTDMTL DETTKTQQSS DILTQKEEPQ
0901: ISGREDDGDI WEILMRTHSE VLNTLQSRLT KLQIVRHFWE RSDIKGAIAA LRKLSDHSVQ ADVINILTDK TEILTLDLFS QLAPVLTGLL GSKTERPVNV
1001: SLEMLLKLVA VFGTVIQSTV SARRVVGVDL HAEERLQICQ SCSAELQKVQ KILPLLTRRG GLIARKAQEL NLVLQTP
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDCGNSAVAH KSGSLSTPAT STGQAGDNKS LVVHSVVPRD SDIGKDSSDS
0401: GKESITFSKT KPGMLLRPAY VRKTPTKFDE TKKQSVAVGY LKKSGLDGEK KLDTETAFDS EMSGRNPYDA DDSIIKSITN KFEQALLPES PTDEAKCMLL
0501: KPPRVQRSPS TKYNEARWAT STDSGALDSK KNGLESSRDM DLPTGLRDDR GSNPCEEDIE NKSISSRSER VLSPEKAGDE LKSLESPGGS KESKSVKVVR
0601: GVKVVSGRTR SLVERFERGE KITHSEDKAA SATVVHSSNS VEEEPLTASV QTVSMMPTQV MPVKLDQATN STTVDVPVLS TRRTKSTPVR VMPVVLGRDT
0701: SMATDTPPVT STRPDRTSAT NLTSDESPVT STRQAKTSPA PVTPVILNQR QTTNMKSDEP PVISTRPLRT SSARVMPVIL NQASTTYDER PLSSSRSART
0801: SPARIMPMKL NQADNMPSYE PPVALTRSAR NSPARVIPVK LNQATNVTAD ASHIRSRQRF SPTQTLATPA VFDQVTDMTL DETTKTQQSS DILTQKEEPQ
0901: ISGREDDGDI WEILMRTHSE VLNTLQSRLT KLQIVRHFWE RSDIKGAIAA LRKLSDHSVQ ADVINILTDK TEILTLDLFS QLAPVLTGLL GSKTERPVNV
1001: SLEMLLKLVA VFGTVIQSTV SARRVVGVDL HAEERLQICQ SCSAELQKVQ KILPLLTRRG GLIARKAQEL NLVLQTP
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4HTH8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.