Factsheet for TraesCS3D01G313800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G317500.1	Wheat	cytosol	98.91	98.56
TraesCS3B01G349000.2	Wheat	cytosol	98.67	98.32
HORVU3Hr1G076760.7	Barley	cytosol, mitochondrion, nucleus	96.86	83.11
OQU87670	Sorghum	cytosol	79.47	79.09
Os01t0780400-02	Rice	cytosol	79.47	78.52
Zm00001d012620_P025	Maize	cytosol	78.38	77.82
KRH21524	Soybean	cytosol	21.14	77.78
CDY54233	Canola	golgi	13.04	58.06
VIT_00s0776g00020.t01	Wine grape	cytosol, mitochondrion, nucleus	32.0	50.86
KRH20528	Soybean	cytosol	42.39	45.12
KRH10790	Soybean	cytosol	44.93	45.09
GSMUA_Achr1P08830_001	Banana	cytosol	52.54	44.94
KRH49977	Soybean	cytosol	35.51	42.92
CDY34658	Canola	mitochondrion	38.65	41.78
TraesCS1D01G161300.1	Wheat	cytosol	38.16	39.5
VIT_00s1406g00010.t01	Wine grape	cytosol, mitochondrion, nucleus	13.65	38.31
TraesCS2D01G561900.1	Wheat	cytosol	41.55	37.19
CDY34846	Canola	nucleus	38.28	34.76
Solyc02g078800.2.1	Tomato	extracellular	42.87	34.5
VIT_00s1397g00010.t01	Wine grape	cytosol	13.89	33.92
KRH21526	Soybean	cytosol, peroxisome	23.67	32.72
CDY03812	Canola	cytosol	43.96	32.41
AT1G11160.1	Thale cress	cytosol	39.86	32.32
Bra031445.1-P	Field mustard	cytosol	43.6	32.17
CDY52222	Canola	cytosol	43.36	32.0
CDY15006	Canola	cytosol	38.65	31.56
AT1G61210.1	Thale cress	cytosol	44.69	31.33
TraesCS1D01G151100.1	Wheat	cytosol	23.79	31.02
TraesCS4D01G056800.1	Wheat	cytosol	8.45	21.88
TraesCS7D01G486800.1	Wheat	cytosol, plastid	8.57	20.52
TraesCS2D01G204900.1	Wheat	cytosol, plastid	8.82	20.22
PGSC0003DMT400057760	Potato	cytosol	18.84	19.62
TraesCS6D01G232000.1	Wheat	cytosol	7.0	19.33
TraesCS2D01G129200.1	Wheat	cytoskeleton, cytosol, nucleus	9.06	18.94
TraesCS1D01G363000.1	Wheat	cytosol	8.45	17.77
TraesCS1D01G451700.1	Wheat	cytosol	10.14	17.68
TraesCS3D01G181100.1	Wheat	cytosol	9.3	16.08
TraesCS5D01G394200.1	Wheat	cytosol	7.73	12.4
TraesCS5D01G300900.1	Wheat	nucleus	10.02	11.64

Protein Annotations

MapMan:13.4.4.2.2	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0008017
GO:GO:0008150	GO:GO:0008352	GO:GO:0009987	GO:GO:0016043	GO:GO:0051013	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	InterPro:Katanin_C-terminal	InterPro:Katanin_bsu1	HAMAP:MF_03022	PFAM:PF00400
PFAM:PF13925	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19845
PANTHER:PTHR19845:SF5	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS3D01G313800	EnsemblPlants:TraesCS3D01G313800.1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg

Description

No Description!

Coordinates

chr3D:+:427803032..427810218

Molecular Weight (calculated)

90802.4 Da

IEP (calculated)

8.186

GRAVY (calculated)

-0.274

Length

828 amino acids

Sequence
(BLAST)

001: MDPEKRGYKF QEFVAHDAEV RSLAIGKKSS RVFITGGSDR NVNLWAIGKQ TPLLSLSGHT SSVEAVEFDT AEVLVLAGSS NGSIKLWDLE EAKVVRSLTG
101: HRSSCTAVEF HPFGEFFASG SSDTDLKIWD IKKKGCLHTY KGHRGAIKSI RFTPDGRWIV TGGEDNIVKV WDLTAGKLLH DFKFHSGQIR CIDFHPQEFL
201: LATGSADRTV KFWDLETFEL IGSAGPEDTG VRSMVFHPDG KTLFCGLEQS LKVFSWEPVR CHDAVDMRWN NLADLSIYEG KLLGCSYHER RVGVWVADIS
301: LIEPYALGVL PKANFFAELV DSVDDNPVKP NGSTAKPIRA VATSHPKNMY KVQESGIAES RVRALHLTPG STDKIKKDRS SSIPRRPDSS VKPSTPVRRM
401: KPVDSPSTNL KTAERSFGQR DIQLLSRTGM AINSSTTKKA PPTESVAVKD IYTTSQAVSV PVVVPRDILE DKSAGSIHRG IGGRTAVPDD FYSPVHLRKR
501: LPSGDSVSSV KSMLAEPDVC SEGLSGLKFS FGLTPNDKKE ESDGTDKGEI RQIAEKMDRI VSFDHPVQSN DDKAAYESPC STTGTARVKY VRGVAVPLGK
601: TKSLVERFEK RESSSIDCSS PTGSCGDHTV KADSPPTSLA EASRTYERDL PTVDEMTSPI DLVRNHDEFI NVVKSRLTKL EMMRHVFNLN GIKGAIAAVA
701: KLPDIAVQAD VVSTLKGKLG LFNLDIFSSL LPVLAGLLNS KTERHAIVAL EMLLDLIKIF GPVIHSTLSS SSPVGVDLQA EQRLQRCTRC FNHLQKIVQA
801: LQPLMMRSGQ SAQLAQELNM SLQDLVVF

Best Arabidopsis Sequence Match ( AT5G23430.2 )
(BLAST)

001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARGGLV AKSVLELNLA FQEVSS

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.