Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH49977 | Soybean | cytosol | 79.43 | 90.22 |
| KRH21524 | Soybean | cytosol | 24.55 | 84.89 |
| KRH10790 | Soybean | cytosol | 76.09 | 71.76 |
| CDY54233 | Canola | golgi | 15.94 | 66.67 |
| KRH21526 | Soybean | cytosol, peroxisome | 50.9 | 66.11 |
| CDY34658 | Canola | mitochondrion | 51.54 | 52.35 |
| KRG93160 | Soybean | cytosol | 43.83 | 44.93 |
| KRH56498 | Soybean | cytosol | 43.57 | 44.66 |
| CDY34846 | Canola | nucleus | 51.41 | 43.86 |
| TraesCS3D01G313800.1 | Wheat | cytosol | 45.12 | 42.39 |
| TraesCS3A01G317500.1 | Wheat | cytosol | 45.24 | 42.36 |
| Os01t0780400-02 | Rice | cytosol | 45.37 | 42.12 |
| TraesCS3B01G349000.2 | Wheat | cytosol | 44.99 | 42.12 |
| AT1G11160.1 | Thale cress | cytosol | 55.01 | 41.92 |
| Zm00001d012620_P025 | Maize | cytosol | 44.09 | 41.13 |
| OQU87670 | Sorghum | cytosol | 43.96 | 41.11 |
| GSMUA_Achr1P08830_001 | Banana | cytosol | 50.26 | 40.39 |
| Bra031445.1-P | Field mustard | cytosol | 56.81 | 39.39 |
| CDY52222 | Canola | cytosol | 56.68 | 39.3 |
| CDY03812 | Canola | cytosol | 56.68 | 39.27 |
| CDY15006 | Canola | cytosol | 50.77 | 38.95 |
| AT1G61210.1 | Thale cress | cytosol | 57.84 | 38.1 |
| HORVU3Hr1G076760.7 | Barley | cytosol, mitochondrion, nucleus | 44.99 | 36.27 |
| PGSC0003DMT400057760 | Potato | cytosol | 30.72 | 30.06 |
| KRH71413 | Soybean | nucleus | 8.74 | 21.25 |
| KRH32024 | Soybean | cytosol | 8.48 | 20.69 |
| KRH06660 | Soybean | nucleus | 9.13 | 20.58 |
| KRG94875 | Soybean | nucleus | 9.13 | 20.58 |
| KRH50874 | Soybean | nucleus | 8.23 | 19.45 |
| KRH02239 | Soybean | nucleus | 8.1 | 19.03 |
| KRH35009 | Soybean | cytosol | 3.34 | 18.84 |
| KRH59511 | Soybean | cytosol, nucleus | 7.2 | 18.67 |
| KRH43376 | Soybean | nucleus | 7.07 | 17.13 |
| KRH55267 | Soybean | cytosol | 3.08 | 16.9 |
| KRH70275 | Soybean | nucleus | 10.03 | 16.25 |
| KRH08668 | Soybean | nucleus | 10.03 | 16.25 |
| KRH57171 | Soybean | cytosol | 10.67 | 16.15 |
| KRH12069 | Soybean | nucleus | 9.77 | 15.97 |
| KRH37088 | Soybean | nucleus | 9.77 | 15.93 |
| KRH03886 | Soybean | nucleus | 10.41 | 15.76 |
| KRG91764 | Soybean | cytoskeleton, cytosol, nucleus | 7.84 | 15.6 |
| KRH37298 | Soybean | cytosol | 7.07 | 14.51 |
| KRH13395 | Soybean | nucleus | 12.08 | 13.17 |
| KRH20750 | Soybean | nucleus | 11.95 | 12.99 |
| KRH35010 | Soybean | nucleus | 1.16 | 5.59 |
Protein Annotations
| EntrezGene:100803487 | MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | EMBL:ACUP02008275 | InterPro:G-protein_beta_WD-40_rep | EnsemblPlantsGene:GLYMA_13G184300 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0008352 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| UniProt:K7M0F8 | EnsemblPlants:KRH20528 | ProteinID:KRH20528 | ProteinID:KRH20528.1 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 |
| HAMAP:MF_03022 | PFAM:PF00400 | PFAM:PF13925 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0002961BB0 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
hypothetical protein
Coordinates
chr13:+:29805943..29815201
Molecular Weight (calculated)
86684.1 Da
IEP (calculated)
6.275
GRAVY (calculated)
-0.385
Length
778 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTGYKLQE FAAHSGNVNC LKLGRKANRL FITGGDDHSV NLWMIGKPTS LMSLCGHTSS VESVTFDSAE VLILSGASSG VIKLWDLEEA KMVRTLTGHR
101: LNCTAVEFHP FGEFFASGSL DTNLNIWDIR KKGCIQTYKG HSQGISTIKF SPDGRWVVSG GFDNVVKVWD LTGGKLLHDF KFHEGHIRSL DFHPLEFLMA
201: TGSADRTVKF WDLETFELIG STRHEVSGVR SIAFHPDGQI LFAGFEDSLK VYSWEPVICH DAVDMGWTTL GDLCIHDGML LGCSFYSNSV GVWVSDISLI
301: EPYNGGLETE KKESTKQKLS LQGRQMEKVE AGVGPAFGLC SMSADNESKE IKNIYIDSSG GNPDTLIRSR SYNSPKVDLP EESKEMLNWS PATRAHAKQN
401: EQTLRKSYIM PNFVPRDIVN DLDSRTFCDT GSKSDSPKDP NFQMKLGSQN EVRESIEDKH PIKSVTEKFE KTLTPDRFSD QDKCNQSSPY SKEMSPVKYV
501: NGVAVLQGRT RSLVERFERR ERTPTDENQA NATPTTIFEN KEKILKEDQT NASPITSITS EKGERFPFGD DQNNMPNVPN TTSETDKSAN FLKVEPQVLG
601: SDSNSANDGE IIEGLMQTHD VTLSNLRSRL TKLQVVQHFW ERNDTKGAIS ALRKLPDQSV QADVISVLVD KMEIITLDLF SCLLPVLTGL LDSNIERHVK
701: VSLDMLLKLV AVFGPTIRST ISAPPSVGID LHAEQRRECS NQCFMQLQKI RMILPILIRR GGILAKSAQE LNLVLQQP
101: LNCTAVEFHP FGEFFASGSL DTNLNIWDIR KKGCIQTYKG HSQGISTIKF SPDGRWVVSG GFDNVVKVWD LTGGKLLHDF KFHEGHIRSL DFHPLEFLMA
201: TGSADRTVKF WDLETFELIG STRHEVSGVR SIAFHPDGQI LFAGFEDSLK VYSWEPVICH DAVDMGWTTL GDLCIHDGML LGCSFYSNSV GVWVSDISLI
301: EPYNGGLETE KKESTKQKLS LQGRQMEKVE AGVGPAFGLC SMSADNESKE IKNIYIDSSG GNPDTLIRSR SYNSPKVDLP EESKEMLNWS PATRAHAKQN
401: EQTLRKSYIM PNFVPRDIVN DLDSRTFCDT GSKSDSPKDP NFQMKLGSQN EVRESIEDKH PIKSVTEKFE KTLTPDRFSD QDKCNQSSPY SKEMSPVKYV
501: NGVAVLQGRT RSLVERFERR ERTPTDENQA NATPTTIFEN KEKILKEDQT NASPITSITS EKGERFPFGD DQNNMPNVPN TTSETDKSAN FLKVEPQVLG
601: SDSNSANDGE IIEGLMQTHD VTLSNLRSRL TKLQVVQHFW ERNDTKGAIS ALRKLPDQSV QADVISVLVD KMEIITLDLF SCLLPVLTGL LDSNIERHVK
701: VSLDMLLKLV AVFGPTIRST ISAPPSVGID LHAEQRRECS NQCFMQLQKI RMILPILIRR GGILAKSAQE LNLVLQQP
0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL FITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSVAFDSAE VLVLAGASSG VIKLWDVEEA KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDSTGGNSAV AHKSGSLSTP ATSTGQAGDN KSLVVHSVVP RDSDIGKDSS
0401: DSGKESITFS KTKPGMLLRP AYVRKTPTKF DETKKQSVAV GYLKKSGLDG EKKLDTETAF DSEMSGRNPY DADDSIIKSI TNKFEQALLP ESPTDEAKCM
0501: LLKPPRVQRS PSTKYNEARW ATSTDSGALD SKKNGLESSR DMDLPTGLRD DRGSNPCEED IENKSISSRS ERVLSPEKAG DELKSLESPG GSKESKSVKV
0601: VRGVKVVSGR TRSLVERFER GEKITHSEDK AASATVVHSS NSVEEEPLTA SVQTVSMMPT QVMPVKLDQA TNSTTVDVPV LSTRRTKSTP VRVMPVVLGR
0701: DTSMATDTPP VTSTRPDRTS ATNLTSDVSG VTSKRQTRTS PAPVMPMILN QTTKMKSDEP SITSTWPDRT SATDLTSDVS GVISSRQTRT SPAPVMPMKL
0801: NQKTKIKSDE PPITSTRPDR PSATNLTSDE SPVTSTRQAK TSPAPVTPVI LNQRQTTNMK SDEPPVISTR PLRTSSARVM PVILNQASTT YDERPLSSSR
0901: SARTSPARIM PMKLNQADNM PSYEPPVALT RSARNSPARV IPVKLNQATN VTADASHIRS RQRFSPTQTL ATPAVFDQVT DMTLDETTKT QQSSDILTQK
1001: EEPQISGRED DGDIWEILMR THSEVLNTLQ SRLTKLQIVR HFWERSDIKG AIAALRKLSD HSVQADVINI LTDKTEILTL DLFSQLAPVL TGLLGSKTER
1101: PVNVSLEMLL KLVAVFGTVI QSTVSARRVV GVDLHAEERL QICQSCSAEL QKVQKILPLL TRRGGLIARK AQELNLVLQT P
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDSTGGNSAV AHKSGSLSTP ATSTGQAGDN KSLVVHSVVP RDSDIGKDSS
0401: DSGKESITFS KTKPGMLLRP AYVRKTPTKF DETKKQSVAV GYLKKSGLDG EKKLDTETAF DSEMSGRNPY DADDSIIKSI TNKFEQALLP ESPTDEAKCM
0501: LLKPPRVQRS PSTKYNEARW ATSTDSGALD SKKNGLESSR DMDLPTGLRD DRGSNPCEED IENKSISSRS ERVLSPEKAG DELKSLESPG GSKESKSVKV
0601: VRGVKVVSGR TRSLVERFER GEKITHSEDK AASATVVHSS NSVEEEPLTA SVQTVSMMPT QVMPVKLDQA TNSTTVDVPV LSTRRTKSTP VRVMPVVLGR
0701: DTSMATDTPP VTSTRPDRTS ATNLTSDVSG VTSKRQTRTS PAPVMPMILN QTTKMKSDEP SITSTWPDRT SATDLTSDVS GVISSRQTRT SPAPVMPMKL
0801: NQKTKIKSDE PPITSTRPDR PSATNLTSDE SPVTSTRQAK TSPAPVTPVI LNQRQTTNMK SDEPPVISTR PLRTSSARVM PVILNQASTT YDERPLSSSR
0901: SARTSPARIM PMKLNQADNM PSYEPPVALT RSARNSPARV IPVKLNQATN VTADASHIRS RQRFSPTQTL ATPAVFDQVT DMTLDETTKT QQSSDILTQK
1001: EEPQISGRED DGDIWEILMR THSEVLNTLQ SRLTKLQIVR HFWERSDIKG AIAALRKLSD HSVQADVINI LTDKTEILTL DLFSQLAPVL TGLLGSKTER
1101: PVNVSLEMLL KLVAVFGTVI QSTVSARRVV GVDLHAEERL QICQSCSAEL QKVQKILPLL TRRGGLIARK AQELNLVLQT P
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4HTH8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.