Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G313800.1 | Wheat | cytosol | 98.56 | 98.91 |
| TraesCS3B01G349000.2 | Wheat | cytosol | 98.07 | 98.07 |
| HORVU3Hr1G076760.7 | Barley | cytosol, mitochondrion, nucleus | 96.27 | 82.9 |
| OQU87670 | Sorghum | cytosol | 78.58 | 78.49 |
| Os01t0780400-02 | Rice | cytosol | 78.7 | 78.04 |
| KRH21524 | Soybean | cytosol | 21.06 | 77.78 |
| Zm00001d012620_P025 | Maize | cytosol | 77.62 | 77.34 |
| CDY54233 | Canola | golgi | 13.0 | 58.06 |
| VIT_00s0776g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus | 31.89 | 50.86 |
| KRH20528 | Soybean | cytosol | 42.36 | 45.24 |
| GSMUA_Achr1P08830_001 | Banana | cytosol | 52.59 | 45.14 |
| KRH10790 | Soybean | cytosol | 44.77 | 45.09 |
| KRH49977 | Soybean | cytosol | 35.5 | 43.07 |
| CDY34658 | Canola | mitochondrion | 38.51 | 41.78 |
| TraesCS1A01G164300.1 | Wheat | cytosol | 37.91 | 38.7 |
| VIT_00s1406g00010.t01 | Wine grape | cytosol, mitochondrion, nucleus | 13.72 | 38.64 |
| TraesCS2A01G592600.1 | Wheat | cytosol | 41.16 | 36.97 |
| CDY34846 | Canola | nucleus | 38.15 | 34.76 |
| Solyc02g078800.2.1 | Tomato | extracellular | 42.96 | 34.69 |
| VIT_00s1397g00010.t01 | Wine grape | cytosol | 13.84 | 33.92 |
| KRH21526 | Soybean | cytosol, peroxisome | 23.71 | 32.89 |
| CDY03812 | Canola | cytosol | 43.8 | 32.41 |
| AT1G11160.1 | Thale cress | cytosol | 39.71 | 32.32 |
| Bra031445.1-P | Field mustard | cytosol | 43.44 | 32.17 |
| CDY52222 | Canola | cytosol | 43.2 | 32.0 |
| CDY15006 | Canola | cytosol | 38.39 | 31.46 |
| AT1G61210.1 | Thale cress | cytosol | 44.52 | 31.33 |
| TraesCS1A01G358200.1 | Wheat | cytoskeleton, cytosol, nucleus | 6.62 | 25.0 |
| TraesCS2A01G196900.1 | Wheat | plastid | 8.66 | 21.75 |
| TraesCS4A01G258000.1 | Wheat | cytosol | 8.42 | 21.67 |
| TraesCS7A01G499900.1 | Wheat | nucleus | 8.42 | 20.23 |
| PGSC0003DMT400057760 | Potato | cytosol | 18.89 | 19.75 |
| TraesCS6A01G250200.1 | Wheat | cytosol | 6.98 | 19.33 |
| TraesCS2A01G126700.2 | Wheat | cytoskeleton, cytosol, nucleus | 9.15 | 19.14 |
| TraesCS1A01G443600.1 | Wheat | cytosol | 10.23 | 17.89 |
| TraesCS3A01G175600.2 | Wheat | plastid | 9.27 | 16.11 |
| TraesCS5A01G293600.2 | Wheat | nucleus | 10.11 | 11.81 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0008017 |
| GO:GO:0008150 | GO:GO:0008352 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 | HAMAP:MF_03022 | PFAM:PF00400 |
| PFAM:PF13925 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19845 |
| PANTHER:PTHR19845:SF5 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS3A01G317500 | EnsemblPlants:TraesCS3A01G317500.1 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | TIGR:cd00200 | SEG:seg |
Description
No Description!
Coordinates
chr3A:-:557956393..557964178
Molecular Weight (calculated)
91102.7 Da
IEP (calculated)
8.230
GRAVY (calculated)
-0.288
Length
831 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPEKRGYKF QEFVAHDAEV RSLAIGKKSS RVFITGGSDR NVNLWAIGKQ TPLLSLSGHT SSVEAVEFDT AEVLVLAGSS NGSIKLWDLE EAKVVRSLTG
101: HRSSCTAVEF HPFGEFFASG SSDTDLKIWD IKKKGCLHTY KGHRGAIKSI RFTPDGRWIV TGGEDNIVKV WDLTAGKLLH DFKFHSGQIR CIDFHPQEFL
201: LATGSADRTV KFWDLETFEL IGSAGPEDTG VRSMVFHPDG KTLFCGLEQS LKVFSWEPVR CHDAVDMRWN NLADLSIYEG KLLGCSYHER RVGVWVADIS
301: LIEPYALGVL PKANFFAELV DSVDDNPVKP NGSTTKPIRA VATSHPKNMY KVQESGIAES RVRALHLTPG STDKIKKDRS SSIPRRPDSS VKPSTPVRRM
401: KPVDSPSTNL KTAERSFGQR DIQLLSRTGM AINSSITKKA PPTESVAVKD IYTTSQAVSV PVVVPRDILE DKSAGSIHRG IGGRTAVPDD FYSPVHLRKR
501: LPSGGTSDSV SSVKSMLAEP DVCSEGLSGL KFSFGLTPND KKEESDSTDK GEIRQIAEKM DRIVSFDHPV QSNDDKAAYE SPCSTTGTAR VKYVRGVAVP
601: LGKTKSLVER FEKRESSSID CSSPTGSSGD HTMKADSPPT SSAEASRTYE RDLPTVDEMT TPIDLVRNHD EFINVVKSRL TKLEMMRHVF NLNGIKGAIA
701: AVAKLPDIAV QADVVSTLKG KLGLFNLDIF SSLLPVLAGL LNSKTERHAI VALEMLLDLI KIFGPVIHST LSSSSPVGVD LQAEQRLQRC TRCFNHLQKI
801: VQALHPLMTR SGQSAQLAQE LNMSLQDLVV F
101: HRSSCTAVEF HPFGEFFASG SSDTDLKIWD IKKKGCLHTY KGHRGAIKSI RFTPDGRWIV TGGEDNIVKV WDLTAGKLLH DFKFHSGQIR CIDFHPQEFL
201: LATGSADRTV KFWDLETFEL IGSAGPEDTG VRSMVFHPDG KTLFCGLEQS LKVFSWEPVR CHDAVDMRWN NLADLSIYEG KLLGCSYHER RVGVWVADIS
301: LIEPYALGVL PKANFFAELV DSVDDNPVKP NGSTTKPIRA VATSHPKNMY KVQESGIAES RVRALHLTPG STDKIKKDRS SSIPRRPDSS VKPSTPVRRM
401: KPVDSPSTNL KTAERSFGQR DIQLLSRTGM AINSSITKKA PPTESVAVKD IYTTSQAVSV PVVVPRDILE DKSAGSIHRG IGGRTAVPDD FYSPVHLRKR
501: LPSGGTSDSV SSVKSMLAEP DVCSEGLSGL KFSFGLTPND KKEESDSTDK GEIRQIAEKM DRIVSFDHPV QSNDDKAAYE SPCSTTGTAR VKYVRGVAVP
601: LGKTKSLVER FEKRESSSID CSSPTGSSGD HTMKADSPPT SSAEASRTYE RDLPTVDEMT TPIDLVRNHD EFINVVKSRL TKLEMMRHVF NLNGIKGAIA
701: AVAKLPDIAV QADVVSTLKG KLGLFNLDIF SSLLPVLAGL LNSKTERHAI VALEMLLDLI KIFGPVIHST LSSSSPVGVD LQAEQRLQRC TRCFNHLQKI
801: VQALHPLMTR SGQSAQLAQE LNMSLQDLVV F
001: MNTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EGLVAAGAAS GTIKLWDLEE AKVVRTLTGH
101: RSNCVSVNFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWIVS GGEDNVVKVW DLTAGKLLHE FKSHEGKIQS LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSGGTETTGV RCLTFNPDGK SVLCGLQESL KIFSWEPIRC HDGVDVGWSN LSDMNVHEGK LLGCSYNQNC VGVWVVDLSR
301: TEPMSGGATQ SNSHPEKTSG SGRDQAGLND NSSKVILGKL PGSQKVDPLL KETKSLGKLS VSQNSDPLPK DTKSTGRSSV SQSSDPLVKE PKPLGRFSAT
401: HSSDTVKESR TLSSTGSVSD SPHRVTLTSA PKSASGISTV VPNAAASKRN FGKANPKANP PVVNKEDYFP VIVPRTEPII EQASESRAEL DIIGRTMPYS
501: LQSKAADSRR LSSSRNEPDL PTSSLLERSQ SQPIEPITLQ DGNTYPSDEG GSWDTAERTN KESKCRVFGR FNSRSLVRSP PRNHDENSDL ISYNANRDSS
601: PTESRKGGRL HSLVLNRERR GRFSNFEGPV SSSSGGNMTA PNSRPSNMLK QRGNHVPVDQ GITSASEEDI VADIMGQHDQ FVSSMHSRLA KLQVVRRYWE
701: RNDIKNSISS IEKMADNAVI ADVLLIVNER PEILTLDTCT SLLPLLTALL GSNMDSHLSV CLDLLLKLVR MYGSQIYSSL SAPSSVGVDI EAEQRMERYS
801: CCFVEFEKIK ACLPSLARRG NLVAKTLHEL NLTFQEVSS
101: RSNCVSVNFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWIVS GGEDNVVKVW DLTAGKLLHE FKSHEGKIQS LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSGGTETTGV RCLTFNPDGK SVLCGLQESL KIFSWEPIRC HDGVDVGWSN LSDMNVHEGK LLGCSYNQNC VGVWVVDLSR
301: TEPMSGGATQ SNSHPEKTSG SGRDQAGLND NSSKVILGKL PGSQKVDPLL KETKSLGKLS VSQNSDPLPK DTKSTGRSSV SQSSDPLVKE PKPLGRFSAT
401: HSSDTVKESR TLSSTGSVSD SPHRVTLTSA PKSASGISTV VPNAAASKRN FGKANPKANP PVVNKEDYFP VIVPRTEPII EQASESRAEL DIIGRTMPYS
501: LQSKAADSRR LSSSRNEPDL PTSSLLERSQ SQPIEPITLQ DGNTYPSDEG GSWDTAERTN KESKCRVFGR FNSRSLVRSP PRNHDENSDL ISYNANRDSS
601: PTESRKGGRL HSLVLNRERR GRFSNFEGPV SSSSGGNMTA PNSRPSNMLK QRGNHVPVDQ GITSASEEDI VADIMGQHDQ FVSSMHSRLA KLQVVRRYWE
701: RNDIKNSISS IEKMADNAVI ADVLLIVNER PEILTLDTCT SLLPLLTALL GSNMDSHLSV CLDLLLKLVR MYGSQIYSSL SAPSSVGVDI EAEQRMERYS
801: CCFVEFEKIK ACLPSLARRG NLVAKTLHEL NLTFQEVSS
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4KB17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.