Factsheet for HORVU3Hr1G076760.7

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G313800.1	Wheat	cytosol	83.11	96.86
TraesCS3A01G317500.1	Wheat	cytosol	82.9	96.27
TraesCS3B01G349000.2	Wheat	cytosol	82.9	96.27
Os01t0780400-02	Rice	cytosol	67.67	77.92
KRH21524	Soybean	cytosol	18.13	77.78
OQU87670	Sorghum	cytosol	67.05	77.76
Zm00001d012620_P025	Maize	cytosol	66.22	76.62
CDY54233	Canola	golgi	11.3	58.6
VIT_00s0776g00020.t01	Wine grape	cytosol, mitochondrion, nucleus	27.36	50.67
KRH20528	Soybean	cytosol	36.27	44.99
KRH10790	Soybean	cytosol	38.13	44.61
GSMUA_Achr1P08830_001	Banana	cytosol	44.66	44.52
KRH49977	Soybean	cytosol	30.26	42.63
CDY34658	Canola	mitochondrion	33.58	42.3
HORVU1Hr1G061600.22	Barley	cytosol	32.54	38.67
VIT_00s1406g00010.t01	Wine grape	cytosol, mitochondrion, nucleus	11.81	38.64
CDY34846	Canola	nucleus	33.26	35.2
Solyc02g078800.2.1	Tomato	extracellular	36.68	34.4
VIT_00s1397g00010.t01	Wine grape	cytosol	11.92	33.92
AT1G11160.1	Thale cress	cytosol	34.51	32.62
CDY03812	Canola	cytosol	37.62	32.32
Bra031445.1-P	Field mustard	cytosol	37.41	32.17
CDY52222	Canola	cytosol	37.31	32.09
KRH21526	Soybean	cytosol, peroxisome	19.79	31.89
CDY15006	Canola	cytosol	33.06	31.46
AT1G61210.1	Thale cress	cytosol	38.24	31.24
HORVU4Hr1G009500.1	Barley	cytosol, plastid	7.36	20.46
HORVU7Hr1G111780.2	Barley	cytosol, plastid	7.25	20.23
HORVU2Hr1G041020.2	Barley	cytosol, plastid	7.46	20.0
PGSC0003DMT400057760	Potato	cytosol	15.96	19.37
HORVU3Hr1G013230.4	Barley	cytosol	7.56	18.25
HORVU6Hr1G063000.1	Barley	cytosol	5.8	17.61
HORVU1Hr1G095080.1	Barley	cytosol, plastid	8.6	16.5
HORVU2Hr1G022250.4	Barley	mitochondrion	8.08	15.73
HORVU0Hr1G027010.1	Barley	plastid	5.8	15.6
HORVU3Hr1G035450.7	Barley	mitochondrion	7.98	15.04
HORVU5Hr1G094540.7	Barley	cytosol, mitochondrion, nucleus	7.05	13.2
HORVU5Hr1G077690.1	Barley	cytosol, mitochondrion, plastid, vacuole	8.6	11.02
HORVU5Hr1G075920.16	Barley	nucleus	7.15	9.39

Protein Annotations

MapMan:13.4.4.2.2	Gene3D:2.130.10.10	UniProt:A0A287LRN8	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0008017	GO:GO:0008150	GO:GO:0008352	GO:GO:0009987	GO:GO:0016043
GO:GO:0051013	EnsemblPlantsGene:HORVU3Hr1G076760	EnsemblPlants:HORVU3Hr1G076760.7	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
InterPro:Katanin_C-terminal	InterPro:Katanin_bsu1	HAMAP:MF_03022	PFAM:PF00400	PFAM:PF13925	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19845	PANTHER:PTHR19845:SF5	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000B4797FD	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:A0A287LRN8]

Coordinates

chrchr3H:-:570001517..570010434

Molecular Weight (calculated)

105866.0 Da

IEP (calculated)

9.848

GRAVY (calculated)

-0.410

Length

965 amino acids

Sequence
(BLAST)

001: LRSVPTATKA RRGTSFLYCA LSTKKKRNET TSGGGPRREK GRQKLHSPHP PTPLHTHPSH CCLRLRARER GAKRLSSRSP SFRPLHTTTR IRNSQPRSRP
101: CSTRRRPRHD DPSASARGPA ARSGGEAGGG MDPEKRGYKF QEFVAHDAEV RSLAIGKKSS RVFITGGSDR NVNLWAIGKQ TPLLSLSGHT SSVEAVEFDT
201: AEVLVLAGSS NGSIKLWDLE EAKVVRSLTG HRSSCTAVEF HPFGEFFASG SSDTDLKIWD IKKKGCLHTY KGHRGAIKSI RFTPDGRWIV TGGEDNIVKV
301: WDLTAGKLLH DFKFHSGQIR CIDFHPQEFL LATGSADRTV KFWDLETFEL IGSAGPEDTG VRSMVFHPDG KTLFCGLDQS LKVFSWEPVR CHDAVDMRWN
401: NLADLSIYEG KLLGCSYHER RVGVWVADIS LIEPYALGVL PEANFFAELV DSVDDNPVKP NGNAAKPIRA VATSHPKNMY KVQESGIAPA ESRVRALHLT
501: PGSTDKIKKD RSSSIPRRPD SSVKPSTPIR CMKPVDSPST NLKTAERSFG QRDIQLLSRT GMAINSSTTK KTQPSESVAV KDIYTTSQAV SVPVVVPRDI
601: LEDKAAGSIN RGIGGRTAVP DDFYSTVHLR KRLPSGGTSD SVSSVKSMLA EPDVCSEGLS GLKFSFGLTL NDKKEESEGT DKREIRQIAE KMDRIVSFEH
701: PVQSNDDKSA YESPCSTTGT ARVKYVRGVA VPLGKTKSLV ERFEKRESST SSIDCSSPTG ICGDHTVKAD SPPTSSTEAS RTYERDLSTV DETTTPIDLV
801: RNHDEFINVV KSRLTKLEMM RHVFNLNGIK GAIAAVAKLP DIAVQADVVS TLKGKLGLFN LDIFSSLLPV LAGLLNSKTE RHTIVALEML LDLIKIFGPV
901: IHSTLSASSP VGVDLQAEQR LQRCTRCFNH LQKIVRALQP LMMRSGQSAQ LAQELNMSLQ DLVVF

Best Arabidopsis Sequence Match ( AT5G08390.1 )
(BLAST)

001: MNTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EGLVAAGAAS GTIKLWDLEE AKVVRTLTGH
101: RSNCVSVNFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWIVS GGEDNVVKVW DLTAGKLLHE FKSHEGKIQS LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSGGTETTGV RCLTFNPDGK SVLCGLQESL KIFSWEPIRC HDGVDVGWSN LSDMNVHEGK LLGCSYNQNC VGVWVVDLSR
301: TEPMSGGATQ SNSHPEKTSG SGRDQAGLND NSSKVILGKL PGSQKVDPLL KETKSLGKLS VSQNSDPLPK DTKSTGRSSV SQSSDPLVKE PKPLGRFSAT
401: HSSDTVKESR TLSSTGSVSD SPHRVTLTSA PKSASGISTV VPNAAASKRN FGKANPKANP PVVNKEDYFP VIVPRTEPII EQASESRAEL DIIGRTMPYS
501: LQSKAADSRR LSSSRNEPDL PTSSLLERSQ SQPIEPITLQ DGNTYPSDEG GSWDTAERTN KESKCRVFGR FNSRSLVRSP PRNHDENSDL ISYNANRDSS
601: PTESRKGGRL HSLVLNRERR GRFSNFEGPV SSSSGGNMTA PNSRPSNMLK QRGNHVPVDQ GITSASEEDI VADIMGQHDQ FVSSMHSRLA KLQVVRRYWE
701: RNDIKNSISS IEKMADNAVI ADVLLIVNER PEILTLDTCT SLLPLLTALL GSNMDSHLSV CLDLLLKLVR MYGSQIYSSL SAPSSVGVDI EAEQRMERYS
801: CCFVEFEKIK ACLPSLARRG NLVAKTLHEL NLTFQEVSS

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4KB17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.