Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G374800.1 | Wheat | cytosol | 93.75 | 95.18 |
| TraesCS1A01G358200.1 | Wheat | cytoskeleton, cytosol, nucleus | 51.25 | 93.18 |
| TraesCS1D01G363000.1 | Wheat | cytosol | 91.75 | 93.15 |
| Os03t0685600-01 | Rice | cytosol | 73.0 | 74.11 |
| KXG26924 | Sorghum | cytoskeleton, cytosol, nucleus | 71.5 | 71.86 |
| HORVU2Hr1G022250.4 | Barley | mitochondrion | 85.75 | 69.15 |
| Zm00001d041945_P003 | Maize | cytosol | 70.75 | 66.59 |
| GSMUA_Achr11P... | Banana | cytosol | 50.5 | 58.55 |
| Solyc07g008860.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 56.5 | 56.93 |
| PGSC0003DMT400073944 | Potato | cytoskeleton, cytosol, nucleus | 56.0 | 56.42 |
| Zm00001d011779_P005 | Maize | cytosol | 69.0 | 56.33 |
| VIT_11s0016g02220.t01 | Wine grape | cytosol | 52.5 | 53.44 |
| VIT_18s0164g00020.t01 | Wine grape | nucleus | 51.75 | 52.94 |
| KRG91764 | Soybean | cytoskeleton, cytosol, nucleus | 51.25 | 52.43 |
| CDX68298 | Canola | cytosol | 48.25 | 49.61 |
| CDY36678 | Canola | cytosol | 47.5 | 48.84 |
| CDX72834 | Canola | cytosol | 48.25 | 48.49 |
| Bra003910.1-P | Field mustard | cytosol | 45.75 | 48.41 |
| AT1G71840.1 | Thale cress | nucleus | 49.25 | 48.4 |
| KRH35009 | Soybean | cytosol | 16.5 | 47.83 |
| Bra016111.1-P | Field mustard | cytosol | 47.5 | 47.62 |
| CDX96351 | Canola | cytosol | 47.5 | 47.62 |
| KRH37298 | Soybean | cytosol | 44.5 | 46.97 |
| HORVU5Hr1G075920.16 | Barley | nucleus | 50.0 | 27.21 |
| HORVU4Hr1G009500.1 | Barley | cytosol, plastid | 21.5 | 24.78 |
| HORVU7Hr1G111780.2 | Barley | cytosol, plastid | 18.75 | 21.68 |
| HORVU2Hr1G041020.2 | Barley | cytosol, plastid | 18.75 | 20.83 |
| HORVU6Hr1G063000.1 | Barley | cytosol | 15.0 | 18.87 |
| HORVU1Hr1G095080.1 | Barley | cytosol, plastid | 23.25 | 18.49 |
| HORVU0Hr1G027010.1 | Barley | plastid | 15.0 | 16.71 |
| HORVU3Hr1G035450.7 | Barley | mitochondrion | 18.5 | 14.45 |
| HORVU5Hr1G094540.7 | Barley | cytosol, mitochondrion, nucleus | 17.25 | 13.4 |
| HORVU5Hr1G077690.1 | Barley | cytosol, mitochondrion, plastid, vacuole | 18.75 | 9.96 |
| HORVU1Hr1G061600.22 | Barley | cytosol | 18.5 | 9.11 |
| HORVU3Hr1G076760.7 | Barley | cytosol, mitochondrion, nucleus | 18.25 | 7.56 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | UniProt:A0A287K4Z9 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | EnsemblPlantsGene:HORVU3Hr1G013230 | EnsemblPlants:HORVU3Hr1G013230.4 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19857 |
| PANTHER:PTHR19857:SF8 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000B46D562 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr3H:+:28587516..28591044
Molecular Weight (calculated)
43072.6 Da
IEP (calculated)
4.109
GRAVY (calculated)
-0.128
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MIRAAPAAAA VMSEGSEGEE VFIDDDDIIN EIPLDEEDLP DQDDDDEQDQ DMIDEVEDHS AYAFHGHTDE VFAAACSPVD ASLVVSGGKD DRGFLWRIGS
101: AEDVQELPGH NDTVSTVAFS SDGKLVACGS MDGQINVWNT ATRTLQGTLE GSESGFEWLK WHLQSHVIIA GSEDFNIWMW DADLNASVNT FAGHGNTVTC
201: GDFTPDGKLI CSGSDDATLR IWDLESAHCR HVIRGHGYHT QGLTCLAITW DSQSIVSGSQ DSSVHIVSIK SGQVVGSLVG HTNSIECIGI SPRYNWVATG
301: SIDQTLIIWD LTRQAIRSVC EHDVGDGVTC LAWIGSSRYV ASGCIDGTVR VWDSLSGELA RILSGHRDAV QSLAVSADCN SIVSVSSDKS ARVFDISMFK
101: AEDVQELPGH NDTVSTVAFS SDGKLVACGS MDGQINVWNT ATRTLQGTLE GSESGFEWLK WHLQSHVIIA GSEDFNIWMW DADLNASVNT FAGHGNTVTC
201: GDFTPDGKLI CSGSDDATLR IWDLESAHCR HVIRGHGYHT QGLTCLAITW DSQSIVSGSQ DSSVHIVSIK SGQVVGSLVG HTNSIECIGI SPRYNWVATG
301: SIDQTLIIWD LTRQAIRSVC EHDVGDGVTC LAWIGSSRYV ASGCIDGTVR VWDSLSGELA RILSGHRDAV QSLAVSADCN SIVSVSSDKS ARVFDISMFK
001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT
Arabidopsis Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.