Factsheet for Solyc07g008860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	97.48	97.48
VIT_18s0164g00020.t01	Wine grape	nucleus	69.27	70.33
VIT_11s0016g02220.t01	Wine grape	cytosol	69.52	70.23
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	67.25	68.29
GSMUA_Achr11P...	Banana	cytosol	56.68	65.22
AT1G71840.1	Thale cress	nucleus	64.48	62.9
CDX72834	Canola	cytosol	62.97	62.81
CDY36678	Canola	cytosol	61.46	62.72
CDX68298	Canola	cytosol	61.21	62.47
Bra003910.1-P	Field mustard	cytosol	58.94	61.9
Bra016111.1-P	Field mustard	cytosol	61.96	61.65
CDX96351	Canola	cytosol	61.21	60.9
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	33.25	60.0
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	59.45	59.45
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	58.94	58.79
Os03t0685600-01	Rice	cytosol	58.19	58.63
TraesCS2D01G129200.1	Wheat	cytoskeleton, cytosol, nucleus	58.44	58.59
TraesCS1B01G374800.1	Wheat	cytosol	56.93	57.36
KRH37298	Soybean	cytosol	54.66	57.26
KRH35009	Soybean	cytosol	19.9	57.25
TraesCS1D01G363000.1	Wheat	cytosol	56.42	56.85
HORVU3Hr1G013230.4	Barley	cytosol	56.93	56.5
Zm00001d041945_P003	Maize	cytosol	57.18	53.41
TraesCS2B01G148600.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	58.44	47.84
HORVU2Hr1G022250.4	Barley	mitochondrion	58.69	46.98
Zm00001d011779_P005	Maize	cytosol	57.93	46.94
Solyc09g065290.2.1	Tomato	cytosol, plastid	21.16	26.67
Solyc09g010620.1.1	Tomato	cytosol	10.58	25.77
Solyc03g059100.1.1	Tomato	nucleus	20.91	25.46
Solyc02g091790.2.1	Tomato	cytosol, nucleus	19.65	24.84
HORVU5Hr1G075920.16	Barley	nucleus	42.07	22.72
Solyc11g005550.1.1	Tomato	cytosol	16.12	21.4
Solyc03g112530.2.1	Tomato	nucleus	21.66	17.88
Solyc01g094480.2.1	Tomato	nucleus	19.65	16.18
Solyc03g111740.2.1	Tomato	cytosol	17.63	14.52
Solyc08g067040.2.1	Tomato	nucleus	17.88	9.29
Solyc02g021360.2.1	Tomato	cytosol	16.37	8.15
Solyc04g008720.2.1	Tomato	cytosol	16.37	8.02
Solyc02g078800.2.1	Tomato	extracellular	17.88	6.9

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0008150	GO:GO:0030687	GO:GO:0042273	GO:GO:0051082	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:K4CC05	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19857	PANTHER:PTHR19857:SF8	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320
SUPFAM:SSF50998	EnsemblPlantsGene:Solyc07g008860.2	EnsemblPlants:Solyc07g008860.2.1	UniParc:UPI000276B7DF	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:3832980..3838477

Molecular Weight (calculated)

42693.7 Da

IEP (calculated)

4.053

GRAVY (calculated)

-0.287

Length

397 amino acids

Sequence
(BLAST)

001: MNAPSPHHED DEHEDEVFLE DSDIIEEINV DEEELVDADD DDEEDEQGGG EFIDEADDSL HTFTGHTGEL YTVTCSPTDA SLVVTGGGDD RGFMWKIGQG
101: DFAFELQGHT DSVSSLAFSS DGQLLASGSL DGNIRVWDIT SGGLKGTLEG PEKGIEWVRW HPRGHVVLAG SEDSSVWMWN ADTSAFMNTF LGHAGSVTCG
201: DFTPDGKLIC TGSDDATLRI WDPKSAQSIH VVRGHPYHTE GLTCLSISSD STLALTGSKD GSAHIVNIIT GKVVTSLSAH TDSIECASFS ASAPWAATGG
301: MDNKLIIWDL QQSLPRSTCE HPDGVTCLSW LGQYRYVATG CVDGKVRVWD SRSGECVRTF SGHADAIQCL AASSNGEYLV SVSIDETSRV FEIAEFN

Best Arabidopsis Sequence Match ( AT1G71840.1 )
(BLAST)

001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.