Factsheet for HORVU2Hr1G022250.4

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	77.22	96.47
TraesCS2D01G129200.1	Wheat	cytoskeleton, cytosol, nucleus	77.02	96.46
HORVU3Hr1G013230.4	Barley	cytosol	69.15	85.75
TraesCS2B01G148600.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	81.25	83.09
Os03t0685600-01	Rice	cytosol	64.72	81.47
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	62.5	77.89
Zm00001d041945_P003	Maize	cytosol	61.09	71.29
Zm00001d011779_P005	Maize	cytosol	59.88	60.61
GSMUA_Achr11P...	Banana	cytosol	42.14	60.58
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	47.18	58.94
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	46.98	58.69
VIT_18s0164g00020.t01	Wine grape	nucleus	45.36	57.54
VIT_11s0016g02220.t01	Wine grape	cytosol	44.56	56.23
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	42.14	53.45
CDX68298	Canola	cytosol	39.52	50.39
CDX72834	Canola	cytosol	40.32	50.25
AT1G71840.1	Thale cress	nucleus	41.13	50.12
CDY36678	Canola	cytosol	39.11	49.87
CDX96351	Canola	cytosol	39.92	49.62
Bra016111.1-P	Field mustard	cytosol	39.72	49.37
Bra003910.1-P	Field mustard	cytosol	37.5	49.21
KRH37298	Soybean	cytosol	36.69	48.02
KRH35009	Soybean	cytosol	13.1	47.1
HORVU5Hr1G075920.16	Barley	nucleus	43.15	29.12
HORVU4Hr1G009500.1	Barley	cytosol, plastid	17.34	24.78
HORVU7Hr1G111780.2	Barley	cytosol, plastid	15.73	22.54
HORVU2Hr1G041020.2	Barley	cytosol, plastid	14.92	20.56
HORVU6Hr1G063000.1	Barley	cytosol	12.3	19.18
HORVU1Hr1G095080.1	Barley	cytosol, plastid	18.35	18.09
HORVU0Hr1G027010.1	Barley	plastid	12.3	16.99
HORVU3Hr1G035450.7	Barley	mitochondrion	14.92	14.45
HORVU5Hr1G094540.7	Barley	cytosol, mitochondrion, nucleus	13.71	13.2
HORVU5Hr1G077690.1	Barley	cytosol, mitochondrion, plastid, vacuole	14.72	9.69
HORVU1Hr1G061600.22	Barley	cytosol	14.31	8.74
HORVU3Hr1G076760.7	Barley	cytosol, mitochondrion, nucleus	15.73	8.08

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A287HBY5	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:HORVU2Hr1G022250	EnsemblPlants:HORVU2Hr1G022250.4	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19857
PANTHER:PTHR19857:SF8	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000B487729	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr2H:-:64369480..64374391

Molecular Weight (calculated)

53675.7 Da

IEP (calculated)

4.424

GRAVY (calculated)

-0.316

Length

496 amino acids

Sequence
(BLAST)

001: RYYIRPLAAL PHPTERRPPA AAADVEGPTR CSSSSALLQT PLPAATRPAT GEPWTRLVPR HRWFFPTVEH RWSCQATHGN TLLSDCARDN QAPTASPAAM
101: SISGEVPEEG SDGEEVFIDE QDIIQEIHLD EEDLPDQDDA DDDDEEDQEM DEVEDHSTYA FHGHTDEVFA AACSPADASL VVSGGKDDRG FLWRIGAAQD
201: VQELTGHGDT VCTVAFSSDG NLVACGSMDG QINVWNTATR TLQGTLEGSS GSGFEWLKWH PRGHLIIAGS EDCNIWMWNA DHNAFLNTFA GHSSTVTCGD
301: FTPDGKLICS GSDDATLRIW DPRSAQCRHV VRGHGYHTQG LTCLAITPDS QSIVSGSEDN SVHIVSINSG QVVGSLVGHT NSIECIGISS RYNWVATGSI
401: DRTLIIWDLA RQAIRSTCEH DEGVTCLAWL GSSRYVASGC IDGMVRIWDS LSGDLARTFS GHRDVVQSLA VSADGNSIVS VSTDKSARVF DISMFK

Best Arabidopsis Sequence Match ( AT1G71840.1 )
(BLAST)

001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.