Factsheet for Bra016111.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96351	Canola	cytosol	95.24	95.24
Bra003910.1-P	Field mustard	cytosol	83.96	88.62
AT1G71840.1	Thale cress	nucleus	86.72	85.01
VIT_18s0164g00020.t01	Wine grape	nucleus	63.66	64.96
VIT_11s0016g02220.t01	Wine grape	cytosol	63.91	64.89
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	61.65	61.96
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	61.4	61.71
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	59.9	61.13
GSMUA_Achr11P...	Banana	cytosol	51.13	59.13
KRH37298	Soybean	cytosol	52.63	55.41
Os03t0685600-01	Rice	cytosol	51.38	52.03
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	50.88	51.01
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	28.07	50.91
TraesCS1D01G363000.1	Wheat	cytosol	49.37	50.0
KRH35009	Soybean	cytosol	17.29	50.0
TraesCS2D01G129200.1	Wheat	cytoskeleton, cytosol, nucleus	49.12	49.49
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	49.12	49.37
TraesCS1B01G374800.1	Wheat	cytosol	48.62	49.24
HORVU3Hr1G013230.4	Barley	cytosol	47.62	47.5
Zm00001d041945_P003	Maize	cytosol	49.37	46.35
TraesCS2B01G148600.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	48.62	40.0
HORVU2Hr1G022250.4	Barley	mitochondrion	49.37	39.72
Zm00001d011779_P005	Maize	cytosol	48.62	39.59
Bra018529.1-P	Field mustard	cytosol	19.55	23.93
Bra019610.1-P	Field mustard	plastid	18.8	23.66
HORVU5Hr1G075920.16	Barley	nucleus	38.85	21.09
Bra024323.1-P	Field mustard	cytosol	15.54	20.88
Bra003387.1-P	Field mustard	cytosol	16.54	19.64
Bra003111.1-P	Field mustard	nucleus	9.52	16.38
Bra004783.1-P	Field mustard	cytosol, golgi	16.79	16.14
Bra022611.1-P	Field mustard	cytosol	19.05	15.97
Bra009201.1-P	Field mustard	nucleus	18.55	15.42
Bra007287.1-P	Field mustard	cytosol	14.04	14.0
Bra012753.1-P	Field mustard	cytosol	16.79	13.93
Bra021188.1-P	Field mustard	cytosol	16.29	13.08
Bra037932.1-P	Field mustard	mitochondrion	18.55	12.87
Bra023416.1-P	Field mustard	nucleus	17.04	10.51
Bra006202.1-P	Field mustard	nucleus	16.54	9.97
Bra005990.1-P	Field mustard	cytosol	17.29	8.14
Bra009683.1-P	Field mustard	cytosol	17.04	7.51
Bra031445.1-P	Field mustard	cytosol	16.54	5.88

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra016111	EnsemblPlants:Bra016111.1	EnsemblPlants:Bra016111.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4DHY4
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19857	PANTHER:PTHR19857:SF8
InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998	UniParc:UPI0002541B55	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	SEG:seg	:	:	:

Description

AT1G71840 (E=8e-178) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA07:+:19357830..19359703

Molecular Weight (calculated)

42720.9 Da

IEP (calculated)

4.037

GRAVY (calculated)

-0.232

Length

399 amino acids

Sequence
(BLAST)

001: MSNTAKSNNP AVEEEEEDDD EGDVFLGESD VIHEFDVDGE DLPEADDDDD NEEEEFDEND DSVHTFTGHK GELYALACSP TDPTLVATGG GDDKGFLFKI
101: GNGDWAAELP GHKDSVSSLA FSYDGQFLAS GGLDGVVQIF DASSGTLKCV LDGPGGGIEW VKWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFAGHNQSV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCH PYHTEGLICL DINSSSSLVI SGSKDGSVHI VNIVTGKVVS SLTSHTESVE CVKFSPSSAT IPMAATGGMD
301: KKLIIWDLQH STPRFICDHA EGVTCVTWVE TSKYLATGCA DGTVSVWDSL LGNCVHTFHG HQDAVQAISV STNTDFIVSV SVDNTARVYE TSEFLNKTA

Best Arabidopsis Sequence Match ( AT1G71840.1 )
(BLAST)

001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.