Factsheet for VIT_11s0016g02220.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0164g00020.t01	Wine grape	nucleus	89.82	90.28
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	70.23	69.52
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	70.23	69.52
GSMUA_Achr11P...	Banana	cytosol	59.8	68.12
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	66.16	66.5
CDX68298	Canola	cytosol	64.38	65.04
CDX72834	Canola	cytosol	65.65	64.82
Bra003910.1-P	Field mustard	cytosol	62.34	64.81
CDY36678	Canola	cytosol	64.12	64.78
AT1G71840.1	Thale cress	nucleus	66.92	64.62
Bra016111.1-P	Field mustard	cytosol	64.89	63.91
CDX96351	Canola	cytosol	64.12	63.16
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	33.59	60.0
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	59.54	58.79
Os03t0685600-01	Rice	cytosol	58.02	57.87
KRH37298	Soybean	cytosol	55.73	57.78
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	57.25	56.68
KRH35009	Soybean	cytosol	19.85	56.52
TraesCS2D01G129200.1	Wheat	cytoskeleton, cytosol, nucleus	56.23	55.81
TraesCS1D01G363000.1	Wheat	cytosol	53.69	53.55
TraesCS1B01G374800.1	Wheat	cytosol	53.69	53.55
Zm00001d041945_P003	Maize	cytosol	57.25	52.94
HORVU3Hr1G013230.4	Barley	cytosol	53.44	52.5
Zm00001d011779_P005	Maize	cytosol	58.27	46.73
TraesCS2B01G148600.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	56.74	45.98
HORVU2Hr1G022250.4	Barley	mitochondrion	56.23	44.56
VIT_07s0151g00960.t01	Wine grape	cytosol	20.87	26.03
VIT_07s0205g00150.t01	Wine grape	cytosol	19.34	24.28
HORVU5Hr1G075920.16	Barley	nucleus	42.49	22.72
VIT_05s0094g00800.t01	Wine grape	cytosol	19.85	22.67
VIT_09s0002g01580.t01	Wine grape	cytosol	15.01	19.73
VIT_13s0064g00360.t01	Wine grape	nucleus	21.37	17.61
VIT_05s0077g02310.t01	Wine grape	cytosol	19.85	16.12
VIT_13s0064g00330.t01	Wine grape	extracellular	5.34	16.03
VIT_17s0000g09750.t01	Wine grape	cytosol	19.85	15.06
VIT_00s0776g00020.t01	Wine grape	cytosol, mitochondrion, nucleus	17.56	13.24
VIT_10s0071g01150.t01	Wine grape	cytosol	18.83	9.28
VIT_13s0019g00220.t01	Wine grape	nucleus	17.05	8.67
VIT_00s1406g00010.t01	Wine grape	cytosol, mitochondrion, nucleus	4.07	5.42
VIT_00s1397g00010.t01	Wine grape	cytosol	4.07	4.72

Protein Annotations

EntrezGene:100254220	wikigene:100254220	Gene3D:2.130.10.10	MapMan:35.1	ProteinID:CBI27914	ProteinID:CBI27914.3
UniProt:D7TB79	EMBL:FN595756	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0008150	GO:GO:0030687	GO:GO:0042273	GO:GO:0051082	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100254220	wikigene:LOC100254220	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19857	PANTHER:PTHR19857:SF8	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0001BE2F49	ArrayExpress:VIT_11s0016g02220	EnsemblPlantsGene:VIT_11s0016g02220	EnsemblPlants:VIT_11s0016g02220.t01	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002282186	RefSeq:XP_002282186.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:1823301..1831120

Molecular Weight (calculated)

42268.7 Da

IEP (calculated)

4.028

GRAVY (calculated)

-0.182

Length

393 amino acids

Sequence
(BLAST)

001: MNTPANHDED EDQGDVFLDE NDIVLEINVD DEDLPDAEDA DDDAEDVEEA DDSMHIFTGH TGELYTVACS PIDPRLVATG GGDDKGFIWK ILDGDWAFEL
101: GGMCHKDSVF SLDFSMDGQL LASGSFDGLV KIWDASSGDL KCTLEGPGGG IEWVRWHPRG HVVLAGSEDC TVWMWNADRG AYLNMFSGHA SSVTCGDFTP
201: DGKTICTGSD DATLRIWNPS SGENIHVVRG HPYHTEGLTC LAITSDSTLA LTGSKDSSVH VVNITTGKVV SSLTSHTDSI ECIGLSLSPP WAATGSMDNK
301: LIFWDLQHSS PRCTCDNEDG VTCLSWLGAS KYIAAGCVDG KVRIWDSLSG DCVRIFSGHS DAIQSVAVSA DRNFLLSVSL DGTARVFEIP DFQ

Best Arabidopsis Sequence Match ( AT1G71840.1 )
(BLAST)

001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.