Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016111.1-P | Field mustard | cytosol | 95.24 | 95.24 |
| CDX72834 | Canola | cytosol | 93.73 | 93.97 |
| CDY36678 | Canola | cytosol | 86.97 | 89.2 |
| CDX68298 | Canola | cytosol | 86.97 | 89.2 |
| AT1G71840.1 | Thale cress | nucleus | 85.96 | 84.28 |
| VIT_18s0164g00020.t01 | Wine grape | nucleus | 62.91 | 64.19 |
| VIT_11s0016g02220.t01 | Wine grape | cytosol | 63.16 | 64.12 |
| Solyc07g008860.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 60.9 | 61.21 |
| PGSC0003DMT400073944 | Potato | cytoskeleton, cytosol, nucleus | 60.65 | 60.96 |
| KRG91764 | Soybean | cytoskeleton, cytosol, nucleus | 58.15 | 59.34 |
| GSMUA_Achr11P... | Banana | cytosol | 50.88 | 58.84 |
| KRH37298 | Soybean | cytosol | 51.38 | 54.09 |
| Os03t0685600-01 | Rice | cytosol | 51.38 | 52.03 |
| TraesCS1A01G358200.1 | Wheat | cytoskeleton, cytosol, nucleus | 28.57 | 51.82 |
| KXG26924 | Sorghum | cytoskeleton, cytosol, nucleus | 51.38 | 51.51 |
| TraesCS1D01G363000.1 | Wheat | cytosol | 49.37 | 50.0 |
| KRH35009 | Soybean | cytosol | 17.29 | 50.0 |
| TraesCS2D01G129200.1 | Wheat | cytoskeleton, cytosol, nucleus | 49.37 | 49.75 |
| TraesCS2A01G126700.2 | Wheat | cytoskeleton, cytosol, nucleus | 49.37 | 49.62 |
| TraesCS1B01G374800.1 | Wheat | cytosol | 48.62 | 49.24 |
| HORVU3Hr1G013230.4 | Barley | cytosol | 47.62 | 47.5 |
| Zm00001d041945_P003 | Maize | cytosol | 49.87 | 46.82 |
| TraesCS2B01G148600.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 48.87 | 40.21 |
| Zm00001d011779_P005 | Maize | cytosol | 49.12 | 40.0 |
| HORVU2Hr1G022250.4 | Barley | mitochondrion | 49.62 | 39.92 |
| CDX86957 | Canola | cytosol | 19.05 | 24.36 |
| CDY00226 | Canola | cytosol, nucleus, plastid | 19.05 | 24.13 |
| CDX97287 | Canola | cytosol | 19.55 | 23.93 |
| CDX91316 | Canola | cytosol | 19.55 | 23.93 |
| CDX70436 | Canola | plastid | 9.52 | 22.75 |
| HORVU5Hr1G075920.16 | Barley | nucleus | 39.6 | 21.5 |
| CDY08856 | Canola | cytosol | 15.29 | 20.54 |
| CDX84544 | Canola | cytosol | 15.29 | 20.33 |
| CDX67810 | Canola | cytosol | 17.54 | 19.5 |
| CDX72090 | Canola | mitochondrion | 14.54 | 17.37 |
| CDY09645 | Canola | cytosol | 20.55 | 17.34 |
| CDY50395 | Canola | cytosol, extracellular, golgi, mitochondrion | 13.78 | 17.24 |
| CDY52843 | Canola | nucleus | 9.77 | 16.81 |
| CDY17912 | Canola | cytosol, golgi | 17.54 | 16.79 |
| CDX79802 | Canola | cytosol, golgi | 17.29 | 16.63 |
| CDX96156 | Canola | cytosol | 19.55 | 16.39 |
| CDX84790 | Canola | cytosol | 19.55 | 16.39 |
| CDY27046 | Canola | cytosol | 19.55 | 16.39 |
| CDY54233 | Canola | golgi | 7.52 | 16.13 |
| CDX98392 | Canola | endoplasmic reticulum, extracellular | 17.04 | 15.35 |
| CDX98931 | Canola | nucleus | 18.05 | 15.0 |
| CDY44171 | Canola | cytosol | 5.76 | 14.84 |
| CDY05801 | Canola | cytosol | 18.3 | 14.54 |
| CDX70097 | Canola | cytosol | 16.04 | 13.85 |
| CDY34965 | Canola | cytosol | 16.04 | 13.62 |
| CDX90556 | Canola | cytosol | 16.29 | 13.51 |
| CDY09730 | Canola | cytosol | 16.29 | 13.51 |
| CDX77842 | Canola | cytosol, nucleus, peroxisome | 3.26 | 13.13 |
| CDY05802 | Canola | mitochondrion | 18.55 | 12.87 |
| CDY28352 | Canola | cytosol | 15.29 | 12.79 |
| CDY08014 | Canola | mitochondrion | 3.26 | 12.75 |
| CDY27174 | Canola | cytosol | 4.76 | 12.42 |
| CDX91118 | Canola | nucleus | 17.54 | 10.87 |
| CDX85646 | Canola | nucleus | 17.29 | 10.66 |
| CDX70506 | Canola | nucleus | 16.79 | 10.65 |
| CDX78524 | Canola | nucleus | 16.79 | 10.03 |
| CDY34658 | Canola | mitochondrion | 18.05 | 9.4 |
| CDX81101 | Canola | cytosol | 17.29 | 8.2 |
| CDY60225 | Canola | cytosol | 17.04 | 8.14 |
| CDX88026 | Canola | cytosol | 16.54 | 7.96 |
| CDX80363 | Canola | cytosol | 16.79 | 7.88 |
| CDY34846 | Canola | nucleus | 17.54 | 7.68 |
| CDY15006 | Canola | cytosol | 16.29 | 6.41 |
| CDY01533 | Canola | plastid | 2.51 | 6.33 |
| CDY52222 | Canola | cytosol | 17.04 | 6.06 |
| CDY03812 | Canola | cytosol | 16.54 | 5.88 |
| CDY69403 | Canola | nucleus | 2.51 | 5.41 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EnsemblPlants:CDX96351 | ProteinID:CDX96351 | ProteinID:CDX96351.1 | InterPro:G-protein_beta_WD-40_rep |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00102502001 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR19857 | PANTHER:PTHR19857:SF8 | InterPro:Quinoprotein_ADH-like_supfam | SMART:SM00320 | SUPFAM:SSF50998 | UniParc:UPI0004EF2277 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | SEG:seg | : |
Description
BnaA07g29620D
Coordinates
chrLK031894:+:412314..414221
Molecular Weight (calculated)
42629.9 Da
IEP (calculated)
4.070
GRAVY (calculated)
-0.209
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNSAKNNNP TVEEEEEEDE GDVFLGESDV IHEFDVDAED LPEADDDDDG NEEEEFDEND DSVHTFTGHK GEVYALACSP TDPTLVATGG GDDKGFLFKI
101: GNGDWAAELP GHKDSVSSLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGGGIEW VKWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNQSV
201: TCGDFTPDGK LICTGSDDGS LIVWNPKTCH LFHTEGLICL DINSSSSLVI SGSKDGSVHI VNTVTGKVVS SLTSHTESVE CVKFSPSSAT IPMAATGGMD
301: KKLIIWDLQH STPRFICDHA EGVTCVTWIG TSKYLATGCA DGTVSVWDSL LGNCVHTFHG HQDVVQAISV SANTEFIVSV SVDNTARVYE TSEFLNKTA
101: GNGDWAAELP GHKDSVSSLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGGGIEW VKWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNQSV
201: TCGDFTPDGK LICTGSDDGS LIVWNPKTCH LFHTEGLICL DINSSSSLVI SGSKDGSVHI VNTVTGKVVS SLTSHTESVE CVKFSPSSAT IPMAATGGMD
301: KKLIIWDLQH STPRFICDHA EGVTCVTWIG TSKYLATGCA DGTVSVWDSL LGNCVHTFHG HQDVVQAISV SANTEFIVSV SVDNTARVYE TSEFLNKTA
001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT
Arabidopsis Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.