CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024323.1-P	Field mustard	cytosol	100.0	100.0
CDX84544	Canola	cytosol	99.33	98.33
AT5G64730.1	Thale cress	cytosol	96.3	95.65
KRH59511	Soybean	cytosol, nucleus	81.48	80.67
Solyc11g005550.1.1	Tomato	cytosol	81.14	80.6
PGSC0003DMT400010145	Potato	cytosol	81.14	80.6
VIT_09s0002g01580.t01	Wine grape	cytosol	80.81	80.27
GSMUA_Achr6P13100_001	Banana	cytosol	81.48	79.61
KRH43376	Soybean	nucleus	81.82	75.7
Os02t0543400-01	Rice	cytosol, mitochondrion	73.06	72.09
TraesCS6B01G275200.2	Wheat	cytosol	71.38	70.67
TraesCS6D01G232000.1	Wheat	cytosol	71.04	70.33
TraesCS6A01G250200.1	Wheat	cytosol	71.04	70.33
EES05216	Sorghum	cytosol	71.38	69.97
Zm00001d050708_P002	Maize	cytosol	71.04	69.64
HORVU6Hr1G063000.1	Barley	cytosol	71.04	66.35
HORVU0Hr1G027010.1	Barley	plastid	71.04	58.77
CDX91316	Canola	cytosol	29.29	26.69
CDX97287	Canola	cytosol	28.62	26.07
CDX86957	Canola	cytosol	26.94	25.64
CDY00226	Canola	cytosol, nucleus, plastid	26.94	25.4
CDX70436	Canola	plastid	13.13	23.35
CDX67810	Canola	cytosol	26.26	21.73
CDX72090	Canola	mitochondrion	22.22	19.76
CDX79802	Canola	cytosol, golgi	26.94	19.28
CDY17912	Canola	cytosol, golgi	26.94	19.18
CDX98392	Canola	endoplasmic reticulum, extracellular	26.26	17.61
CDX72834	Canola	cytosol	20.54	15.33
CDX96351	Canola	cytosol	20.54	15.29
CDY52843	Canola	nucleus	11.78	15.09
CDY54233	Canola	golgi	9.43	15.05
CDY36678	Canola	cytosol	19.19	14.65
CDX68298	Canola	cytosol	18.86	14.4
CDY34965	Canola	cytosol	22.56	14.26
CDX77842	Canola	cytosol, nucleus, peroxisome	4.71	14.14
CDY28352	Canola	cytosol	22.56	14.05
CDX98931	Canola	nucleus	22.56	13.96
CDY08014	Canola	mitochondrion	4.71	13.73
CDY09730	Canola	cytosol	22.22	13.72
CDX90556	Canola	cytosol	22.22	13.72
CDX70097	Canola	cytosol	21.21	13.64
CDY05801	Canola	cytosol	22.9	13.55
CDY09645	Canola	cytosol	21.55	13.53
CDX84790	Canola	cytosol	21.55	13.45
CDY27046	Canola	cytosol	21.21	13.24
CDX96156	Canola	cytosol	21.21	13.24
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	14.14	13.17
CDY05802	Canola	mitochondrion	22.9	11.83
CDY27174	Canola	cytosol	5.39	10.46
CDX91118	Canola	nucleus	20.88	9.63
CDX70506	Canola	nucleus	20.2	9.54
CDX85646	Canola	nucleus	20.54	9.43
CDY44171	Canola	cytosol	4.71	9.03
CDX78524	Canola	nucleus	20.2	8.98
CDY34658	Canola	mitochondrion	18.86	7.31
CDY60225	Canola	cytosol	17.51	6.23
CDX81101	Canola	cytosol	17.17	6.06
CDX88026	Canola	cytosol	16.84	6.03
CDY34846	Canola	nucleus	18.52	6.03
CDX80363	Canola	cytosol	16.84	5.88
CDY52222	Canola	cytosol	18.18	4.81
CDY03812	Canola	cytosol	17.85	4.72
CDY15006	Canola	cytosol	15.82	4.64
CDY01533	Canola	plastid	2.36	4.43
CDY69403	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078F634	EnsemblPlants:CDY08856	ProteinID:CDY08856	ProteinID:CDY08856.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00000827001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22847	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000253F479	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

BnaA06g23680DBnaA06g23680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F634]

Coordinates

chrLK031989:-:913933..915718

Molecular Weight (calculated)

32862.1 Da

IEP (calculated)

7.478

GRAVY (calculated)

-0.229

Length

297 amino acids

Sequence
(BLAST)

001: MTELPTKEAN LLKGHEGAVL AARFNGDGNY ALTCGKDRTI RLWNPHRGIL IKTYKSHGRE VRDVHVTSDN AKFCSCGGDR QVYYWDVSTG RVIRKFRGHD
101: GEVNAVKFND SSAVVVSAGF DRSLRVWDCR SHSVEPVQII DTFLDTVMSV VLTKTEIIGG SVDGTVRTFD IRMGREMSDN LGQPVNCISV SNDGNCVLAG
201: CLDSTLRLLD RTTGELLQVY KGHISKSFKT DCCLTNSDAH VIGGSEDGMV YFWDLVDAKV VSKFRAHDLV VTSVSYHPKE DCMLTSSVDG TVRVWKK

Best Arabidopsis Sequence Match ( AT5G64730.1 )
(BLAST)

001: MSATELPTKE AHILKGHEGA VLAARFNGDG NYALTCGKDR TIRLWNPHRG ILIKTYKSHG REVRDVHVTS DNAKFCSCGG DRQVYYWDVS TGRVIRKFRG
101: HDGEVNAVKF NDSSSVVVSA GFDRSLRVWD CRSHSVEPVQ IIDTFLDTVM SVVLTKTEII GGSVDGTVRT FDMRIGREMS DNLGQPVNCI SISNDGNCVL
201: AGCLDSTLRL LDRTTGELLQ VYKGHISKSF KTDCCLTNSD AHVIGGSEDG LVFFWDLVDA KVLSKFRAHD LVVTSVSYHP KEDCMLTSSV DGTIRVWKK

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.