Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH59511 | Soybean | cytosol, nucleus | 90.97 | 97.33 |
| VIT_09s0002g01580.t01 | Wine grape | cytosol | 81.31 | 87.29 |
| GSMUA_Achr6P13100_001 | Banana | cytosol | 80.06 | 84.54 |
| Solyc11g005550.1.1 | Tomato | cytosol | 76.64 | 82.27 |
| Bra024323.1-P | Field mustard | cytosol | 75.7 | 81.82 |
| CDY08856 | Canola | cytosol | 75.7 | 81.82 |
| CDX84544 | Canola | cytosol | 76.32 | 81.67 |
| PGSC0003DMT400010145 | Potato | cytosol | 76.01 | 81.61 |
| AT5G64730.1 | Thale cress | cytosol | 75.39 | 80.94 |
| EES05216 | Sorghum | cytosol | 69.47 | 73.6 |
| Zm00001d050708_P002 | Maize | cytosol | 68.85 | 72.94 |
| Os02t0543400-01 | Rice | cytosol, mitochondrion | 67.91 | 72.43 |
| TraesCS6B01G275200.2 | Wheat | cytosol | 66.67 | 71.33 |
| TraesCS6D01G232000.1 | Wheat | cytosol | 66.36 | 71.0 |
| TraesCS6A01G250200.1 | Wheat | cytosol | 66.36 | 71.0 |
| HORVU6Hr1G063000.1 | Barley | cytosol | 67.29 | 67.92 |
| HORVU0Hr1G027010.1 | Barley | plastid | 67.29 | 60.17 |
| KRH50874 | Soybean | nucleus | 28.35 | 27.66 |
| KRH02239 | Soybean | nucleus | 28.04 | 27.19 |
| KRH32024 | Soybean | cytosol | 26.79 | 26.96 |
| KRH71413 | Soybean | nucleus | 26.79 | 26.88 |
| KRG94875 | Soybean | nucleus | 24.92 | 23.19 |
| KRH06660 | Soybean | nucleus | 24.61 | 22.9 |
| KRH35009 | Soybean | cytosol | 8.41 | 19.57 |
| KRG91764 | Soybean | cytoskeleton, cytosol, nucleus | 21.18 | 17.39 |
| KRH55267 | Soybean | cytosol | 7.17 | 16.2 |
| KRH21524 | Soybean | cytosol | 11.21 | 16.0 |
| KRH57171 | Soybean | cytosol | 24.61 | 15.37 |
| KRH03886 | Soybean | nucleus | 24.61 | 15.37 |
| KRH08668 | Soybean | nucleus | 21.5 | 14.38 |
| KRH70275 | Soybean | nucleus | 21.18 | 14.17 |
| KRH37298 | Soybean | cytosol | 15.89 | 13.46 |
| KRH12069 | Soybean | nucleus | 19.31 | 13.03 |
| KRH37088 | Soybean | nucleus | 19.0 | 12.79 |
| KRH35010 | Soybean | nucleus | 4.67 | 9.32 |
| KRH13395 | Soybean | nucleus | 19.0 | 8.54 |
| KRH20750 | Soybean | nucleus | 19.0 | 8.52 |
| KRH20528 | Soybean | cytosol | 17.13 | 7.07 |
| KRH56498 | Soybean | cytosol | 15.89 | 6.72 |
| KRG93160 | Soybean | cytosol | 15.89 | 6.72 |
| KRH10790 | Soybean | cytosol | 16.51 | 6.42 |
| KRH49977 | Soybean | cytosol | 11.84 | 5.55 |
| KRH21526 | Soybean | cytosol, peroxisome | 5.3 | 2.84 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EMBL:ACUP02004851 | ncoils:Coil | InterPro:G-protein_beta_WD-40_rep | EnsemblPlantsGene:GLYMA_08G145700 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | UniProt:I1KTE2 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | EnsemblPlants:KRH43376 | ProteinID:KRH43376 | ProteinID:KRH43376.1 | PFAM:PF00400 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22847 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI0002966EA4 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:-:11082312..11086032
Molecular Weight (calculated)
35866.8 Da
IEP (calculated)
5.043
GRAVY (calculated)
-0.465
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFHFPERSE EEEEEEEEEE EEMSVEDLPG KEVNVLKGHE GGVLAARFNG DGNYVLSCGK DRTIRLWNPH RGIHIKTYKS HAREVRDVHV TQDNSKLCSC
101: GGDRQIFYWD VATGRVIRKF RGHDGEVNGV KFNEYSSVVV SAGYDQSLRA WDCRSHSTEP IQIIDTFADS VMSVCLTKTE IIGGSVDGTV RTFDIRIGRE
201: TSDNLGQPVN CVSMSNDGNC ILAGCLDSTL RLLDRSTGEL LQEYKGHTNK SYKLDCCLTN TDAHVTGVSE DGFIYFWDLV DASVVSRFKA HTSVVTSVSY
301: HPKENCMVTS SVDGTIRVWK T
101: GGDRQIFYWD VATGRVIRKF RGHDGEVNGV KFNEYSSVVV SAGYDQSLRA WDCRSHSTEP IQIIDTFADS VMSVCLTKTE IIGGSVDGTV RTFDIRIGRE
201: TSDNLGQPVN CVSMSNDGNC ILAGCLDSTL RLLDRSTGEL LQEYKGHTNK SYKLDCCLTN TDAHVTGVSE DGFIYFWDLV DASVVSRFKA HTSVVTSVSY
301: HPKENCMVTS SVDGTIRVWK T
001: MSATELPTKE AHILKGHEGA VLAARFNGDG NYALTCGKDR TIRLWNPHRG ILIKTYKSHG REVRDVHVTS DNAKFCSCGG DRQVYYWDVS TGRVIRKFRG
101: HDGEVNAVKF NDSSSVVVSA GFDRSLRVWD CRSHSVEPVQ IIDTFLDTVM SVVLTKTEII GGSVDGTVRT FDMRIGREMS DNLGQPVNCI SISNDGNCVL
201: AGCLDSTLRL LDRTTGELLQ VYKGHISKSF KTDCCLTNSD AHVIGGSEDG LVFFWDLVDA KVLSKFRAHD LVVTSVSYHP KEDCMLTSSV DGTIRVWKK
101: HDGEVNAVKF NDSSSVVVSA GFDRSLRVWD CRSHSVEPVQ IIDTFLDTVM SVVLTKTEII GGSVDGTVRT FDMRIGREMS DNLGQPVNCI SISNDGNCVL
201: AGCLDSTLRL LDRTTGELLQ VYKGHISKSF KTDCCLTNSD AHVIGGSEDG LVFFWDLVDA KVLSKFRAHD LVVTSVSYHP KEDCMLTSSV DGTIRVWKK
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AH2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.