CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56498	Soybean	cytosol	97.23	97.23
KRH21524	Soybean	cytosol	22.92	77.33
VIT_10s0071g01150.t01	Wine grape	cytosol	75.23	71.64
GSMUA_Achr3P27210_001	Banana	golgi	41.63	66.81
Solyc02g021360.2.1	Tomato	cytosol	68.25	64.91
GSMUA_Achr4P05370_001	Banana	golgi, mitochondrion	64.03	61.29
PGSC0003DMT400065114	Potato	cytosol	64.16	60.05
AT5G23430.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	63.64	57.71
CDX88026	Canola	cytosol	62.58	57.3
AT5G08390.1	Thale cress	cytosol	62.71	56.73
CDX80363	Canola	cytosol	62.19	55.53
CDY60225	Canola	cytosol	61.0	55.45
CDX81101	Canola	cytosol	61.13	55.17
Bra005990.1-P	Field mustard	cytosol	61.26	54.83
Bra009683.1-P	Field mustard	cytosol	62.06	51.99
Zm00001d026621_P006	Maize	cytosol	62.32	51.98
KXG27434	Sorghum	cytosol	61.66	50.87
TraesCS2D01G561900.1	Wheat	cytosol	61.13	50.16
Zm00001d001828_P033	Maize	cytosol	60.87	50.11
TraesCS2A01G592600.1	Wheat	cytosol	61.0	50.05
TraesCS2B01G591600.2	Wheat	cytosol	60.21	49.84
Os04t0677700-00	Rice	cytosol	58.23	49.66
GSMUA_Achr9P23740_001	Banana	golgi	65.09	47.14
KRH20528	Soybean	cytosol	44.93	43.83
KRH10790	Soybean	cytosol	47.3	43.52
KRH49977	Soybean	cytosol	36.76	40.73
KRH21526	Soybean	cytosol, peroxisome	24.77	31.39
KRH71413	Soybean	nucleus	9.75	23.12
KRH32024	Soybean	cytosol	9.49	22.57
KRH06660	Soybean	nucleus	9.88	21.74
KRG94875	Soybean	nucleus	9.88	21.74
KRH02239	Soybean	nucleus	9.09	20.85
KRH50874	Soybean	nucleus	8.96	20.67
KRH35009	Soybean	cytosol	3.29	18.12
KRH59511	Soybean	cytosol, nucleus	6.85	17.33
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	8.56	16.62
KRH70275	Soybean	nucleus	10.28	16.25
KRH08668	Soybean	nucleus	10.14	16.04
KRH43376	Soybean	nucleus	6.72	15.89
KRH12069	Soybean	nucleus	9.88	15.76
KRH37088	Soybean	nucleus	9.88	15.72
KRH55267	Soybean	cytosol	2.9	15.49
KRH37298	Soybean	cytosol	7.51	15.04
KRH57171	Soybean	cytosol	10.14	14.98
KRH03886	Soybean	nucleus	9.75	14.4
KRH20750	Soybean	nucleus	12.12	12.85
KRH13395	Soybean	nucleus	11.99	12.75
KRH35010	Soybean	nucleus	1.58	7.45

Protein Annotations

EntrezGene:100788097	MapMan:13.4.4.2.2	Gene3D:2.130.10.10	EMBL:ACUP02011541	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_19G000400
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	GO:GO:0008150	GO:GO:0008352
GO:GO:0009987	GO:GO:0016043	GO:GO:0051013	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:K7MVR8	EnsemblPlants:KRG93160	ProteinID:KRG93160	ProteinID:KRG93160.1	ProteinID:KRG93161.1	InterPro:Katanin_C-terminal
InterPro:Katanin_bsu1	HAMAP:MF_03022	PFAM:PF00400	PFAM:PF13925	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19845	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000294DC8F
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr19:+:38184..53792

Molecular Weight (calculated)

83013.0 Da

IEP (calculated)

7.714

GRAVY (calculated)

-0.257

Length

759 amino acids

Sequence
(BLAST)

001: MTTKRAYKLQ EFVAHASTVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLSGHSS GIDSVSFDSS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCTSVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNAIR FTPDGRWVVS GGEDNTVKLW DLTAGKLLHD FKCHEGQIQC IDFHPNEFLL
201: ATGSADRTVK FWDLETFELI GSAGPETTGV RSLTFSPDGR TLLCGLHESL KVFSWEPIRC HDMVDVGWSR LSDLNFHEGK LLGCSYNQSC VGVWVVDISR
301: IEPYALNNVN HLNGHSETKS SSGNMTVLNE ITAKARLSVS QNPDQLLKET RSLGRLSVSQ DSDPLKEGKC LASTGSAPST PQRINLNSGP KTVPGGSTTV
401: LNTTAQKKSS LKSHTTSSAP LINKSDIIPV IVPRTSMRSE PVADSRKEVG VSGRTMPFPS QSKAADVRKF PNNRDDVDKP LSPVIESAAS KGSELSGFAD
501: KNNFPASVSS TQDEARGLKV NRDVCSVEVQ KGGRMRSLLN LEKRERSLNY EGPRQGISHG RISSVHVLPF SGRAHSISTE KATVSATDED SIADVMEQHD
601: EFLSSMLARS AKLQMVFRCW ERNDVKEVIG IMARMDDHAV IADVVSIIME KIDIITLEIC AGLLPLLTDL LQSEMERHLG ISLEMLLKLV RIFGSVIYST
701: VSATQPVGVD IEAENRLERC NLCFTELEKV KRFLPSLSRR GGSIAKSAQE LNLALQDVS

Best Arabidopsis Sequence Match ( AT5G08390.1 )
(BLAST)

001: MNTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EGLVAAGAAS GTIKLWDLEE AKVVRTLTGH
101: RSNCVSVNFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWIVS GGEDNVVKVW DLTAGKLLHE FKSHEGKIQS LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSGGTETTGV RCLTFNPDGK SVLCGLQESL KIFSWEPIRC HDGVDVGWSN LSDMNVHEGK LLGCSYNQNC VGVWVVDLSR
301: TEPMSGGATQ SNSHPEKTSG SGRDQAGLND NSSKVILGKL PGSQKVDPLL KETKSLGKLS VSQNSDPLPK DTKSTGRSSV SQSSDPLVKE PKPLGRFSAT
401: HSSDTVKESR TLSSTGSVSD SPHRVTLTSA PKSASGISTV VPNAAASKRN FGKANPKANP PVVNKEDYFP VIVPRTEPII EQASESRAEL DIIGRTMPYS
501: LQSKAADSRR LSSSRNEPDL PTSSLLERSQ SQPIEPITLQ DGNTYPSDEG GSWDTAERTN KESKCRVFGR FNSRSLVRSP PRNHDENSDL ISYNANRDSS
601: PTESRKGGRL HSLVLNRERR GRFSNFEGPV SSSSGGNMTA PNSRPSNMLK QRGNHVPVDQ GITSASEEDI VADIMGQHDQ FVSSMHSRLA KLQVVRRYWE
701: RNDIKNSISS IEKMADNAVI ADVLLIVNER PEILTLDTCT SLLPLLTALL GSNMDSHLSV CLDLLLKLVR MYGSQIYSSL SAPSSVGVDI EAEQRMERYS
801: CCFVEFEKIK ACLPSLARRG NLVAKTLHEL NLTFQEVSS

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4KB17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.