CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20528	Soybean	cytosol	90.22	79.43
KRH21526	Soybean	cytosol, peroxisome	57.96	66.28
CDY54233	Canola	golgi	17.66	65.05
KRH10790	Soybean	cytosol	75.77	62.91
KRH21524	Soybean	cytosol	17.52	53.33
CDY34658	Canola	mitochondrion	49.2	43.99
CDY34846	Canola	nucleus	49.63	37.28
KRG93160	Soybean	cytosol	40.73	36.76
KRH56498	Soybean	cytosol	40.44	36.5
Os01t0780400-02	Rice	cytosol	44.09	36.04
TraesCS3D01G313800.1	Wheat	cytosol	42.92	35.51
TraesCS3A01G317500.1	Wheat	cytosol	43.07	35.5
TraesCS3B01G349000.2	Wheat	cytosol	42.92	35.38
AT1G11160.1	Thale cress	cytosol	52.55	35.26
Zm00001d012620_P025	Maize	cytosol	42.77	35.13
OQU87670	Sorghum	cytosol	42.34	34.86
GSMUA_Achr1P08830_001	Banana	cytosol	48.47	34.3
Bra031445.1-P	Field mustard	cytosol	54.6	33.33
CDY52222	Canola	cytosol	54.45	33.24
CDY03812	Canola	cytosol	54.45	33.21
AT1G61210.1	Thale cress	cytosol	55.47	32.18
CDY15006	Canola	cytosol	47.45	32.05
PGSC0003DMT400057760	Potato	cytosol	35.47	30.57
HORVU3Hr1G076760.7	Barley	cytosol, mitochondrion, nucleus	42.63	30.26
KRH35009	Soybean	cytosol	3.8	18.84
KRH71413	Soybean	nucleus	7.74	16.56
KRH32024	Soybean	cytosol	7.59	16.3
KRH50874	Soybean	nucleus	7.59	15.81
KRH06660	Soybean	nucleus	7.88	15.65
KRG94875	Soybean	nucleus	7.88	15.65
KRH02239	Soybean	nucleus	7.45	15.41
KRH59511	Soybean	cytosol, nucleus	5.69	13.0
KRH08668	Soybean	nucleus	8.91	12.71
KRH70275	Soybean	nucleus	8.61	12.29
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	7.01	12.28
KRH37298	Soybean	cytosol	6.57	11.87
KRH43376	Soybean	nucleus	5.55	11.84
KRH12069	Soybean	nucleus	7.74	11.13
KRH37088	Soybean	nucleus	7.74	11.11
KRH57171	Soybean	cytosol	8.18	10.89
KRH03886	Soybean	nucleus	7.88	10.51
KRH13395	Soybean	nucleus	10.8	10.36
KRH20750	Soybean	nucleus	10.66	10.2
KRH55267	Soybean	cytosol	1.9	9.15
KRH35010	Soybean	nucleus	0.29	1.24

Protein Annotations

MapMan:13.4.4.2.2	Gene3D:2.130.10.10	UniProt:A0A0R0J5T7	EMBL:ACUP02004649	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_07G192100
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	GO:GO:0008150	GO:GO:0008352
GO:GO:0009987	GO:GO:0016043	GO:GO:0051013	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlants:KRH49977	ProteinID:KRH49977	ProteinID:KRH49977.1	ProteinID:KRH49978.1	InterPro:Katanin_C-terminal	PFAM:PF00400
PFAM:PF13925	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19845
PANTHER:PTHR19845:SF5	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0006ED95A8	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:35957795..35965797

Molecular Weight (calculated)

76630.9 Da

IEP (calculated)

6.188

GRAVY (calculated)

-0.420

Length

685 amino acids

Sequence
(BLAST)

001: MVRTLTGHKS NCTAVEFHPF GEFFASGSSD TNLNIWDIRK KGCIQTYKGH SQGISTIKFS PDGRWVVSGG FDNVVKVWDL TGGKLLHDFK FHKGHIRSLD
101: FHPLEFLMAT GSADRTVKFW DLETFELIGS TRHEVLGVRS IAFHPDGRTL FAGLEDSLKV YSWEPVICHD VVDMGWTTLG DLCIHDEKLL GCSFYSNSVG
201: VWVSDISLIE PYSGGLETEK KESTEQELGL QGRQMEKVEA SVGLTFGLCS MSPDNDSKEI KNIYIDSSGG NPDTLLRSRS YNSPKVDLPE ESKEMLNWSP
301: ATRAREKQNE ALRKSYIVPN VVHRDILNDL DSGTVCDTIS KSDSAKNPTF QMKLGSQNEV RESVEDKHPI KSVTEKLEKT LTPDRFSDQE KCNQSSPYSK
401: EMSPVKYVNG VAVLQGRTRS LVERFERRER TPINEDQANA TPTTIFENKE KKFKDQTNAS PITTPTSEKG ERILVNEDQN NTSAISNTTS ETDTSANFLK
501: VEPQVFGRDS NSANDGEIIE GLMQTHDVTL SNLRSRLTKL QVVRHFWEQN DTKSAISALR KLPDLSVQAD VISVLVEKME ILTLDLFSCL LPVLTGLLDS
601: NIERHVKVSL DMLLKLVAVF GPTVRSTISA PPSVGVDLHA EQRRECSNQC FMQLQKIRLI LPILIRRGGL LAKSAQELNL VLQQP

Best Arabidopsis Sequence Match ( AT1G11160.1 )
(BLAST)

0001: MAKRGYKLQE FVAHSGNVNC LSIGKKTSRL LLTGGDDYKV NLWSIGKTTS PMSLCGHTSP VDSVAFNSEE VLVLAGASSG VIKLWDLEES KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DTNLRVWDTR KKGCIQTYKG HTRGISTIEF SPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KCHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG TTRPEATGVR AIAFHPDGQT LFCGLDDGLK VYSWEPVICR DGVDMGWSTL GDFCINEGKF IGCSYYRNSV GIWVSDISEL
0301: EPYGAVSEDK NECMVKRFSV LNDQSERMGS GPRGSVSPDY ETREIKNIYV DSTGGNLNVA QNPGSLKATL PLESGKVATM VSEKQNAAYF GPAGDKYSST
0401: SRDSDSGEES SYSERESIPF SRTKSGMLLR PAHVRKTLAK FEESKQSAVV QSATRKKSGL AVEEEPQTQN AFLSEQNASK PFDAEDSIIK GITNKFEKAL
0501: SSEPPTDEAN RMFLKPPRIH RSSNSKYNDT RRAMSADPAT FGKGGMENSG DVEDIPSKTE RVLSREKPGD EQKNTEYPSG SRELNPVKIV EGVNVVSGRT
0601: RSLVEKFERG EKTTHTEGAS TTIEQNNNAV QEDPRKTSRQ TGETPVISTR RARSTPARVM PIVLNRDSNV TSDEPPLTQP ARTSSFPVMP VILNQASNVT
0701: YDEPSVALTQ ESRTSHARIL PVTFNQATNI TSEEASVTLR RQRRNSAARV RPVLLSQATS HECPVTSVRP LRTSPARVMP TKLNQSVNMT SDTSHIASMH
0801: RVSPTQMLAT PTVIDQVADM TLDETHATQI QPACDNMPQK EEPNISDRED DSDITENLML THNEFLSTLQ SRLTKLQIVR HFWERSDVKG AIGALRKLTD
0901: QSVQADVISI LTEKIEILTL DMFSQLVPVL TSLLGSRTER PVNVSLDMLL KLVAVFGTVI RSTVSAPRIV GVDLHANERL EICQICSAGL HKIQRILPVL
1001: ARRGGLITRK AQELNLVLQE P

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4I7E1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.