Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34658 | Canola | mitochondrion | 61.41 | 81.85 |
| CDY34846 | Canola | nucleus | 71.69 | 80.26 |
| CDY54233 | Canola | golgi | 13.22 | 72.58 |
| VIT_00s0776g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus | 30.66 | 60.08 |
| AT1G61210.1 | Thale cress | cytosol | 69.25 | 59.86 |
| KRH20528 | Soybean | cytosol | 41.92 | 55.01 |
| KRH49977 | Soybean | cytosol | 35.26 | 52.55 |
| VIT_00s1397g00010.t01 | Wine grape | cytosol | 14.69 | 44.25 |
| Solyc02g078800.2.1 | Tomato | extracellular | 43.58 | 43.25 |
| AT5G23430.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 32.81 | 40.02 |
| Os01t0780400-02 | Rice | cytosol | 32.81 | 39.98 |
| TraesCS3D01G313800.1 | Wheat | cytosol | 32.32 | 39.86 |
| TraesCS3A01G317500.1 | Wheat | cytosol | 32.32 | 39.71 |
| Zm00001d012620_P025 | Maize | cytosol | 32.42 | 39.69 |
| OQU87670 | Sorghum | cytosol | 32.32 | 39.66 |
| TraesCS3B01G349000.2 | Wheat | cytosol | 32.13 | 39.47 |
| AT5G08390.1 | Thale cress | cytosol | 32.03 | 38.98 |
| GSMUA_Achr1P08830_001 | Banana | cytosol | 36.04 | 38.02 |
| HORVU3Hr1G076760.7 | Barley | cytosol, mitochondrion, nucleus | 32.62 | 34.51 |
| PGSC0003DMT400057760 | Potato | cytosol | 22.43 | 28.8 |
| AT3G49660.1 | Thale cress | cytosol | 6.66 | 21.45 |
| AT2G43770.1 | Thale cress | cytosol | 6.66 | 19.83 |
| AT5G64730.1 | Thale cress | cytosol | 5.68 | 19.4 |
| AT4G02730.1 | Thale cress | cytosol | 6.27 | 19.22 |
| AT1G71840.1 | Thale cress | nucleus | 7.05 | 17.69 |
| AT4G15900.1 | Thale cress | cytosol | 7.93 | 16.67 |
| AT3G16650.1 | Thale cress | cytosol | 7.64 | 16.28 |
| AT5G52820.1 | Thale cress | cytosol | 7.35 | 15.86 |
| AT5G50230.1 | Thale cress | cytosol | 7.44 | 14.93 |
| AT5G13480.2 | Thale cress | nucleus | 8.33 | 12.94 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | EntrezGene:837657 | ProteinID:AEE28692.1 | ArrayExpress:AT1G11160 | EnsemblPlantsGene:AT1G11160 |
| RefSeq:AT1G11160 | TAIR:AT1G11160 | RefSeq:AT1G11160-TAIR-G | EnsemblPlants:AT1G11160.1 | TAIR:AT1G11160.1 | Unigene:At.43445 |
| UniProt:F4I7E1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0008017 |
| GO:GO:0008150 | GO:GO:0008352 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 | GO:GO:0080008 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 | HAMAP:MF_03022 |
| RefSeq:NP_172582.2 | PFAM:PF00400 | PFAM:PF13925 | PO:PO:0000037 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0001738F97 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4I7E1]
Coordinates
chr1:+:3733084..3739844
Molecular Weight (calculated)
112533.0 Da
IEP (calculated)
6.972
GRAVY (calculated)
-0.449
Length
1021 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAKRGYKLQE FVAHSGNVNC LSIGKKTSRL LLTGGDDYKV NLWSIGKTTS PMSLCGHTSP VDSVAFNSEE VLVLAGASSG VIKLWDLEES KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DTNLRVWDTR KKGCIQTYKG HTRGISTIEF SPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KCHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG TTRPEATGVR AIAFHPDGQT LFCGLDDGLK VYSWEPVICR DGVDMGWSTL GDFCINEGKF IGCSYYRNSV GIWVSDISEL
0301: EPYGAVSEDK NECMVKRFSV LNDQSERMGS GPRGSVSPDY ETREIKNIYV DSTGGNLNVA QNPGSLKATL PLESGKVATM VSEKQNAAYF GPAGDKYSST
0401: SRDSDSGEES SYSERESIPF SRTKSGMLLR PAHVRKTLAK FEESKQSAVV QSATRKKSGL AVEEEPQTQN AFLSEQNASK PFDAEDSIIK GITNKFEKAL
0501: SSEPPTDEAN RMFLKPPRIH RSSNSKYNDT RRAMSADPAT FGKGGMENSG DVEDIPSKTE RVLSREKPGD EQKNTEYPSG SRELNPVKIV EGVNVVSGRT
0601: RSLVEKFERG EKTTHTEGAS TTIEQNNNAV QEDPRKTSRQ TGETPVISTR RARSTPARVM PIVLNRDSNV TSDEPPLTQP ARTSSFPVMP VILNQASNVT
0701: YDEPSVALTQ ESRTSHARIL PVTFNQATNI TSEEASVTLR RQRRNSAARV RPVLLSQATS HECPVTSVRP LRTSPARVMP TKLNQSVNMT SDTSHIASMH
0801: RVSPTQMLAT PTVIDQVADM TLDETHATQI QPACDNMPQK EEPNISDRED DSDITENLML THNEFLSTLQ SRLTKLQIVR HFWERSDVKG AIGALRKLTD
0901: QSVQADVISI LTEKIEILTL DMFSQLVPVL TSLLGSRTER PVNVSLDMLL KLVAVFGTVI RSTVSAPRIV GVDLHANERL EICQICSAGL HKIQRILPVL
1001: ARRGGLITRK AQELNLVLQE P
0101: SNCSAVEFHP FGEFLASGSS DTNLRVWDTR KKGCIQTYKG HTRGISTIEF SPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KCHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG TTRPEATGVR AIAFHPDGQT LFCGLDDGLK VYSWEPVICR DGVDMGWSTL GDFCINEGKF IGCSYYRNSV GIWVSDISEL
0301: EPYGAVSEDK NECMVKRFSV LNDQSERMGS GPRGSVSPDY ETREIKNIYV DSTGGNLNVA QNPGSLKATL PLESGKVATM VSEKQNAAYF GPAGDKYSST
0401: SRDSDSGEES SYSERESIPF SRTKSGMLLR PAHVRKTLAK FEESKQSAVV QSATRKKSGL AVEEEPQTQN AFLSEQNASK PFDAEDSIIK GITNKFEKAL
0501: SSEPPTDEAN RMFLKPPRIH RSSNSKYNDT RRAMSADPAT FGKGGMENSG DVEDIPSKTE RVLSREKPGD EQKNTEYPSG SRELNPVKIV EGVNVVSGRT
0601: RSLVEKFERG EKTTHTEGAS TTIEQNNNAV QEDPRKTSRQ TGETPVISTR RARSTPARVM PIVLNRDSNV TSDEPPLTQP ARTSSFPVMP VILNQASNVT
0701: YDEPSVALTQ ESRTSHARIL PVTFNQATNI TSEEASVTLR RQRRNSAARV RPVLLSQATS HECPVTSVRP LRTSPARVMP TKLNQSVNMT SDTSHIASMH
0801: RVSPTQMLAT PTVIDQVADM TLDETHATQI QPACDNMPQK EEPNISDRED DSDITENLML THNEFLSTLQ SRLTKLQIVR HFWERSDVKG AIGALRKLTD
0901: QSVQADVISI LTEKIEILTL DMFSQLVPVL TSLLGSRTER PVNVSLDMLL KLVAVFGTVI RSTVSAPRIV GVDLHANERL EICQICSAGL HKIQRILPVL
1001: ARRGGLITRK AQELNLVLQE P
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.