Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0531300-00 | Rice | endoplasmic reticulum, extracellular | 22.91 | 86.49 |
| OQU87670 | Sorghum | cytosol | 79.0 | 79.57 |
| TraesCS3D01G313800.1 | Wheat | cytosol | 78.52 | 79.47 |
| Zm00001d012620_P025 | Maize | cytosol | 78.52 | 78.9 |
| TraesCS3A01G317500.1 | Wheat | cytosol | 78.04 | 78.7 |
| TraesCS3B01G349000.2 | Wheat | cytosol | 78.04 | 78.7 |
| KRH21524 | Soybean | cytosol | 20.88 | 77.78 |
| HORVU3Hr1G076760.7 | Barley | cytosol, mitochondrion, nucleus | 77.92 | 67.67 |
| CDY54233 | Canola | golgi | 13.48 | 60.75 |
| VIT_00s0776g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus | 32.1 | 51.63 |
| KRH20528 | Soybean | cytosol | 42.12 | 45.37 |
| KRH10790 | Soybean | cytosol | 44.39 | 45.09 |
| GSMUA_Achr1P08830_001 | Banana | cytosol | 52.03 | 45.04 |
| KRH49977 | Soybean | cytosol | 36.04 | 44.09 |
| CDY34658 | Canola | mitochondrion | 38.54 | 42.17 |
| VIT_00s1406g00010.t01 | Wine grape | cytosol, mitochondrion, nucleus | 13.96 | 39.66 |
| Os10t0494800-01 | Rice | cytosol | 38.54 | 36.91 |
| Solyc02g078800.2.1 | Tomato | extracellular | 44.03 | 35.86 |
| Os04t0677700-00 | Rice | cytosol | 38.07 | 35.84 |
| CDY34846 | Canola | nucleus | 38.42 | 35.31 |
| VIT_00s1397g00010.t01 | Wine grape | cytosol | 14.2 | 35.1 |
| AT1G11160.1 | Thale cress | cytosol | 39.98 | 32.81 |
| KRH21526 | Soybean | cytosol, peroxisome | 23.39 | 32.72 |
| Bra031445.1-P | Field mustard | cytosol | 43.08 | 32.17 |
| CDY03812 | Canola | cytosol | 43.08 | 32.15 |
| CDY52222 | Canola | cytosol | 42.96 | 32.09 |
| CDY15006 | Canola | cytosol | 38.42 | 31.76 |
| AT1G61210.1 | Thale cress | cytosol | 44.27 | 31.41 |
| Os06t0653800-01 | Rice | nucleus | 8.71 | 21.28 |
| PGSC0003DMT400057760 | Potato | cytosol | 19.81 | 20.88 |
| Os07t0572000-01 | Rice | plastid | 8.35 | 20.71 |
| Os03t0725400-02 | Rice | cytosol | 7.88 | 20.37 |
| Os03t0685600-01 | Rice | cytosol | 8.47 | 18.02 |
| Os02t0543400-01 | Rice | cytosol, mitochondrion | 6.32 | 17.61 |
| Os10t0104500-01 | Rice | cytosol | 9.9 | 17.29 |
| Os11t0594200-01 | Rice | cytosol | 9.9 | 17.29 |
| Os03t0339100-01 | Rice | nucleus | 9.19 | 16.31 |
| Os03t0746600-01 | Rice | nucleus | 8.0 | 13.11 |
| Os01t0951000-02 | Rice | cytosol, mitochondrion, nucleus | 1.55 | 4.59 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | EntrezGene:4327835 | ProteinID:BAD52853.1 | ProteinID:BAF06350.1 | ProteinID:BAS74638.1 |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0008017 | GO:GO:0008150 |
| GO:GO:0008352 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 | HAMAP:MF_03022 | EnsemblPlantsGene:Os01g0780400 | EnsemblPlants:Os01t0780400-02 |
| PFAM:PF00400 | PFAM:PF13925 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 | UniProt:Q5ZCG1 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0000446B97 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_015621855.1 |
| SEG:seg | : | : | : | : | : |
Description
katanin P80c, Katanin regulatory subunit P80cHypothetical gene. (Os01t0780400-01);WD40 repeat-like domain containing protein. (Os01t0780400-02)
Coordinates
chr1:+:33050848..33058490
Molecular Weight (calculated)
91831.2 Da
IEP (calculated)
7.764
GRAVY (calculated)
-0.292
Length
838 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPEKRGYRL QEFVAHDAEV RSLSIGKKSS RVFITGGSDR KVNLWAIGKQ TPLLSLSGHT GSVEAVEFDT AEVLVLAGSS NGSIKLWDLE EAKVVRSLTG
101: HRSSCTSVEF HPFGEFFASG SSDTDLKIWD IKKKGCIHTY KGHRGAIRTI RFTPDGRWVV TGGEDNIVKV WDLTAGKLLH DFKFHSGQIR CIDFHPQEFL
201: LATGSADRTV KFWDLETFEL IGSAGPEATG VRSTVFHPDG KTLFCGLDQS LKVFSWEPVR CHDVVDMGWS NLADLSIYEG KLLGCSYHEC RVGVWVADIS
301: LIGPYALGVL PKANFFAELV HSLDDNPSKT IDTTAKSIPA LATTHPKNLY KVKETGTAES GIRGSNLTPA SMDKTKRDKS GATPRRPDSS FKSSIQSSTP
401: MRRMKAADSP YTNRKTVERN FAQRDASLAS RTGTANNSST VKKGHLAESV SVKDIYTTPQ TVSVPVVMPR DILEDKTAGS ISGGIRGRAA VADDFHAPVH
501: SRKLSVNSFV GDSVNSTKSM LTDPDVCSEG FSGLKFSFGL TPYYKKEEYD NVDKVDSMDK GDNTQMTEKL DRTVSLEHQL QSNDTSEPPC STTETTKVKY
601: VRGVAVPLGK TKSLVERWEK REATNVECSP PTGSCGDRAV RSDGPSSFSA EPSQAYEKDL STIDEAMIPI NLMQNHDEFI NAVKSRLTKL EMMRHVFDQN
701: GIKGAIAAVA KLPDNAVLAD VVSTLKGKLD LFNLDIFLSF LPVLAGLLTS KAERHAIVSL ELLLDLIKIF GPVIRSTLSA HSAVGVDIQA EQRLQRCSRC
801: FNHLQKIQQV LHPLIMRGGQ SAQLAQELNL SLQDLVVI
101: HRSSCTSVEF HPFGEFFASG SSDTDLKIWD IKKKGCIHTY KGHRGAIRTI RFTPDGRWVV TGGEDNIVKV WDLTAGKLLH DFKFHSGQIR CIDFHPQEFL
201: LATGSADRTV KFWDLETFEL IGSAGPEATG VRSTVFHPDG KTLFCGLDQS LKVFSWEPVR CHDVVDMGWS NLADLSIYEG KLLGCSYHEC RVGVWVADIS
301: LIGPYALGVL PKANFFAELV HSLDDNPSKT IDTTAKSIPA LATTHPKNLY KVKETGTAES GIRGSNLTPA SMDKTKRDKS GATPRRPDSS FKSSIQSSTP
401: MRRMKAADSP YTNRKTVERN FAQRDASLAS RTGTANNSST VKKGHLAESV SVKDIYTTPQ TVSVPVVMPR DILEDKTAGS ISGGIRGRAA VADDFHAPVH
501: SRKLSVNSFV GDSVNSTKSM LTDPDVCSEG FSGLKFSFGL TPYYKKEEYD NVDKVDSMDK GDNTQMTEKL DRTVSLEHQL QSNDTSEPPC STTETTKVKY
601: VRGVAVPLGK TKSLVERWEK REATNVECSP PTGSCGDRAV RSDGPSSFSA EPSQAYEKDL STIDEAMIPI NLMQNHDEFI NAVKSRLTKL EMMRHVFDQN
701: GIKGAIAAVA KLPDNAVLAD VVSTLKGKLD LFNLDIFLSF LPVLAGLLTS KAERHAIVSL ELLLDLIKIF GPVIRSTLSA HSAVGVDIQA EQRLQRCSRC
801: FNHLQKIQQV LHPLIMRGGQ SAQLAQELNL SLQDLVVI
0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL FITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSVAFDSAE VLVLAGASSG VIKLWDVEEA KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDSTGGNSAV AHKSGSLSTP ATSTGQAGDN KSLVVHSVVP RDSDIGKDSS
0401: DSGKESITFS KTKPGMLLRP AYVRKTPTKF DETKKQSVAV GYLKKSGLDG EKKLDTETAF DSEMSGRNPY DADDSIIKSI TNKFEQALLP ESPTDEAKCM
0501: LLKPPRVQRS PSTKYNEARW ATSTDSGALD SKKNGLESSR DMDLPTGLRD DRGSNPCEED IENKSISSRS ERVLSPEKAG DELKSLESPG GSKESKSVKV
0601: VRGVKVVSGR TRSLVERFER GEKITHSEDK AASATVVHSS NSVEEEPLTA SVQTVSMMPT QVMPVKLDQA TNSTTVDVPV LSTRRTKSTP VRVMPVVLGR
0701: DTSMATDTPP VTSTRPDRTS ATNLTSDVSG VTSKRQTRTS PAPVMPMILN QTTKMKSDEP SITSTWPDRT SATDLTSDVS GVISSRQTRT SPAPVMPMKL
0801: NQKTKIKSDE PPITSTRPDR PSATNLTSDE SPVTSTRQAK TSPAPVTPVI LNQRQTTNMK SDEPPVISTR PLRTSSARVM PVILNQASTT YDERPLSSSR
0901: SARTSPARIM PMKLNQADNM PSYEPPVALT RSARNSPARV IPVKLNQATN VTADASHIRS RQRFSPTQTL ATPAVFDQVT DMTLDETTKT QQSSDILTQK
1001: EEPQISGRED DGDIWEILMR THSEVLNTLQ SRLTKLQIVR HFWERSDIKG AIAALRKLSD HSVQADVINI LTDKTEILTL DLFSQLAPVL TGLLGSKTER
1101: PVNVSLEMLL KLVAVFGTVI QSTVSARRVV GVDLHAEERL QICQSCSAEL QKVQKILPLL TRRGGLIARK AQELNLVLQT P
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDSTGGNSAV AHKSGSLSTP ATSTGQAGDN KSLVVHSVVP RDSDIGKDSS
0401: DSGKESITFS KTKPGMLLRP AYVRKTPTKF DETKKQSVAV GYLKKSGLDG EKKLDTETAF DSEMSGRNPY DADDSIIKSI TNKFEQALLP ESPTDEAKCM
0501: LLKPPRVQRS PSTKYNEARW ATSTDSGALD SKKNGLESSR DMDLPTGLRD DRGSNPCEED IENKSISSRS ERVLSPEKAG DELKSLESPG GSKESKSVKV
0601: VRGVKVVSGR TRSLVERFER GEKITHSEDK AASATVVHSS NSVEEEPLTA SVQTVSMMPT QVMPVKLDQA TNSTTVDVPV LSTRRTKSTP VRVMPVVLGR
0701: DTSMATDTPP VTSTRPDRTS ATNLTSDVSG VTSKRQTRTS PAPVMPMILN QTTKMKSDEP SITSTWPDRT SATDLTSDVS GVISSRQTRT SPAPVMPMKL
0801: NQKTKIKSDE PPITSTRPDR PSATNLTSDE SPVTSTRQAK TSPAPVTPVI LNQRQTTNMK SDEPPVISTR PLRTSSARVM PVILNQASTT YDERPLSSSR
0901: SARTSPARIM PMKLNQADNM PSYEPPVALT RSARNSPARV IPVKLNQATN VTADASHIRS RQRFSPTQTL ATPAVFDQVT DMTLDETTKT QQSSDILTQK
1001: EEPQISGRED DGDIWEILMR THSEVLNTLQ SRLTKLQIVR HFWERSDIKG AIAALRKLSD HSVQADVINI LTDKTEILTL DLFSQLAPVL TGLLGSKTER
1101: PVNVSLEMLL KLVAVFGTVI QSTVSARRVV GVDLHAEERL QICQSCSAEL QKVQKILPLL TRRGGLIARK AQELNLVLQT P
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4HTH8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.