Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
22364583
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400057760 | Potato | cytosol | 68.32 | 88.43 |
| KRH21524 | Soybean | cytosol | 18.76 | 85.78 |
| CDY54233 | Canola | golgi | 12.05 | 66.67 |
| VIT_00s0776g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus | 33.14 | 65.45 |
| KRH10790 | Soybean | cytosol | 46.55 | 58.06 |
| CDY34658 | Canola | mitochondrion | 38.19 | 51.31 |
| VIT_00s1397g00010.t01 | Wine grape | cytosol | 16.81 | 51.03 |
| KRH21526 | Soybean | cytosol, peroxisome | 27.21 | 46.74 |
| CDY34846 | Canola | nucleus | 40.33 | 45.5 |
| Os01t0780400-02 | Rice | cytosol | 35.86 | 44.03 |
| Solyc02g021360.2.1 | Tomato | cytosol | 34.01 | 43.86 |
| AT1G11160.1 | Thale cress | cytosol | 43.25 | 43.58 |
| Zm00001d012620_P025 | Maize | cytosol | 35.08 | 43.29 |
| OQU87670 | Sorghum | cytosol | 34.79 | 43.03 |
| TraesCS3A01G317500.1 | Wheat | cytosol | 34.69 | 42.96 |
| TraesCS3D01G313800.1 | Wheat | cytosol | 34.5 | 42.87 |
| TraesCS3B01G349000.2 | Wheat | cytosol | 34.4 | 42.6 |
| Solyc04g008720.2.1 | Tomato | cytosol | 33.53 | 42.59 |
| Bra031445.1-P | Field mustard | cytosol | 46.16 | 42.34 |
| CDY52222 | Canola | cytosol | 46.06 | 42.25 |
| GSMUA_Achr1P08830_001 | Banana | cytosol | 39.46 | 41.94 |
| CDY03812 | Canola | cytosol | 45.58 | 41.76 |
| CDY15006 | Canola | cytosol | 40.91 | 41.52 |
| AT1G61210.1 | Thale cress | cytosol | 46.16 | 40.22 |
| HORVU3Hr1G076760.7 | Barley | cytosol, mitochondrion, nucleus | 34.4 | 36.68 |
| Solyc09g010620.1.1 | Tomato | cytosol | 3.98 | 25.15 |
| Solyc09g065290.2.1 | Tomato | cytosol, plastid | 6.51 | 21.27 |
| Solyc03g059100.1.1 | Tomato | nucleus | 6.71 | 21.17 |
| Solyc02g091790.2.1 | Tomato | cytosol, nucleus | 6.41 | 21.02 |
| Solyc07g008860.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 6.9 | 17.88 |
| Solyc11g005550.1.1 | Tomato | cytosol | 4.96 | 17.06 |
| Solyc03g112530.2.1 | Tomato | nucleus | 7.68 | 16.42 |
| Solyc03g111740.2.1 | Tomato | cytosol | 7.09 | 15.15 |
| Solyc01g094480.2.1 | Tomato | nucleus | 6.9 | 14.73 |
| Solyc08g067040.2.1 | Tomato | nucleus | 8.55 | 11.52 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 |
| GO:GO:0008017 | GO:GO:0008150 | GO:GO:0008352 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:K4B9A4 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 |
| HAMAP:MF_03022 | PFAM:PF00400 | PFAM:PF13925 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:Solyc02g078800.2 |
| EnsemblPlants:Solyc02g078800.2.1 | UniParc:UPI00027684A2 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:K4B9A4]
Coordinates
chr2:+:43446093..43459460
Molecular Weight (calculated)
114075.0 Da
IEP (calculated)
7.398
GRAVY (calculated)
-0.481
Length
1029 amino acids
Sequence
(BLAST)
(BLAST)
0001: MANRGYKLQE FVAHSGNVNC LRFGKKTRRQ FLTGGDDQNV NLWSIGKPTS TTSLSGHTSP IESVAFDSAE VLVLAGASSG VIKLWDLEET KMVRTLTGHR
0101: SYCTACEFHP FGEFFASGSM DTNLKIWDIR KKGCIHTYKG HTRGISTIRF SPDGRWVVSG GFDNVVKVWD LTAGKLLHDF KFHEGHIRSI DFHPLEFLLA
0201: TGSADRTVNF WDLETFELIG STRREAAGVR SITFHPEGRT LFCGLDDSLK VYSWEPVNCH DSVEMGWSTL SDLCIHDGKL VGGAYYQNYV GVWVADISLI
0301: DPHGAGSTPD RQSNLEQKQD HVESRLERIG SNRSSNSNLR CTSPDIDSKE IKNIYVDCEN PVTIKKVTSP SPKVVPPLNS KENKNQLSQK LNSVVGLPAK
0401: INGLPVGKSF VVPSVVPRDI PEEKKLDTCR RESVSATSAS SGIPQKPSHI KCPSSNNFDM EKISVALQSE IADNLLHTVD SKKESDINSR LMADNDSRER
0501: SEAKDSAGKH GGEKLEKTSL QPPLNSRENR NVGSEGRKEL HPVRFVNGVA VVRGRTRSLV ERFEKREGLN IDDVHKLDVV SHSKTEETDV SPLPPSCCKD
0601: EELETFSTKF EEEPETSPLT ASRFKTEEAM RPMPLAHSKV EETNSSALPA SQYEVEDLEA SHKPASKSKS EEVRKNHLPA SHSEAEKLEA SLMLASQFKY
0701: EEVRESHLPA SCSKAEEFEA SPILASQVKS EDVRKSRLPT SRSRTGELGA SSIPASQLKP ENVRRSRLSA SRSKAEELEA SPVPVSKFRS GTRTSRLSAF
0801: RSKAEEAKTS RLLASRSKAE EAQTLRLLSS GSNAEQPQIA PLPDANQQII ARCEPVQNDD IIIEDLMQRH DVLLNSFRSR LTKLQVVRHY WERNDIRGAF
0901: EALRKLSDYS VQADVVSVLV DKMEIITLDL FSFLLPVLLA LLETKIERHA NVSLELLLKL VAVFGPVVRS AASARPSVGV DLHAEARIKC CRQCFAYLQD
1001: IQKTLPELIR GGGQPAKGAV QLNLLLQES
0101: SYCTACEFHP FGEFFASGSM DTNLKIWDIR KKGCIHTYKG HTRGISTIRF SPDGRWVVSG GFDNVVKVWD LTAGKLLHDF KFHEGHIRSI DFHPLEFLLA
0201: TGSADRTVNF WDLETFELIG STRREAAGVR SITFHPEGRT LFCGLDDSLK VYSWEPVNCH DSVEMGWSTL SDLCIHDGKL VGGAYYQNYV GVWVADISLI
0301: DPHGAGSTPD RQSNLEQKQD HVESRLERIG SNRSSNSNLR CTSPDIDSKE IKNIYVDCEN PVTIKKVTSP SPKVVPPLNS KENKNQLSQK LNSVVGLPAK
0401: INGLPVGKSF VVPSVVPRDI PEEKKLDTCR RESVSATSAS SGIPQKPSHI KCPSSNNFDM EKISVALQSE IADNLLHTVD SKKESDINSR LMADNDSRER
0501: SEAKDSAGKH GGEKLEKTSL QPPLNSRENR NVGSEGRKEL HPVRFVNGVA VVRGRTRSLV ERFEKREGLN IDDVHKLDVV SHSKTEETDV SPLPPSCCKD
0601: EELETFSTKF EEEPETSPLT ASRFKTEEAM RPMPLAHSKV EETNSSALPA SQYEVEDLEA SHKPASKSKS EEVRKNHLPA SHSEAEKLEA SLMLASQFKY
0701: EEVRESHLPA SCSKAEEFEA SPILASQVKS EDVRKSRLPT SRSRTGELGA SSIPASQLKP ENVRRSRLSA SRSKAEELEA SPVPVSKFRS GTRTSRLSAF
0801: RSKAEEAKTS RLLASRSKAE EAQTLRLLSS GSNAEQPQIA PLPDANQQII ARCEPVQNDD IIIEDLMQRH DVLLNSFRSR LTKLQVVRHY WERNDIRGAF
0901: EALRKLSDYS VQADVVSVLV DKMEIITLDL FSFLLPVLLA LLETKIERHA NVSLELLLKL VAVFGPVVRS AASARPSVGV DLHAEARIKC CRQCFAYLQD
1001: IQKTLPELIR GGGQPAKGAV QLNLLLQES
0001: MAKRGYKLQE FVAHSGNVNC LSIGKKTSRL LLTGGDDYKV NLWSIGKTTS PMSLCGHTSP VDSVAFNSEE VLVLAGASSG VIKLWDLEES KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DTNLRVWDTR KKGCIQTYKG HTRGISTIEF SPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KCHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG TTRPEATGVR AIAFHPDGQT LFCGLDDGLK VYSWEPVICR DGVDMGWSTL GDFCINEGKF IGCSYYRNSV GIWVSDISEL
0301: EPYGAVSEDK NECMVKRFSV LNDQSERMGS GPRGSVSPDY ETREIKNIYV DCGNLNVAQN PGSLKATLPL ESGKVATMVS EKQNAAYFGP AGDKYSSTSR
0401: DSDSGEESSY SERESIPFSR TKSGMLLRPA HVRKTLAKFE ESKQSAVVQS ATRKKSGLAV EEEPQTQNAF LSEQNASKPF DAEDSIIKGI TNKFEKALSS
0501: EPPTDEANRM FLKPPRIHRS SNSKYNDTRR AMSADPATFG KGGMENSGDV EDIPSKTERV LSREKPGDEQ KNTEYPSGSR ELNPVKIVEG VNVVSGRTRS
0601: LVEKFERGEK TTHTEGASTT IEQNNNAVQE DPRKTSRQTG ETPVISTRRA RSTPARVMPI VLNRDSNVTS DEPPLTQPAR TSSFPVMPVI LNQASNVTYD
0701: EPSVALTQES RTSHARILPV TFNQATNITS EEASVTLRRQ RRNSAARVRP VLLSQATSHE CPVTSVRPLR TSPARVMPTK LNQSVNMTSD TSHIASMHRV
0801: SPTQMLATPT VIDQVADMTL DETHATQIQP ACDNMPQKEE PNISDREDDS DITENLMLTH NEFLSTLQSR LTKLQIVRHF WERSDVKGAI GALRKLTDQS
0901: VQADVISILT EKIEILTLDM FSQLVPVLTS LLGSRTERPV NVSLDMLLKL VAVFGTVIRS TVSAPRIVGV DLHANERLEI CQICSAGLHK IQRILPVLAR
1001: RGGLITRKAQ ELNLVLQEP
0101: SNCSAVEFHP FGEFLASGSS DTNLRVWDTR KKGCIQTYKG HTRGISTIEF SPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KCHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG TTRPEATGVR AIAFHPDGQT LFCGLDDGLK VYSWEPVICR DGVDMGWSTL GDFCINEGKF IGCSYYRNSV GIWVSDISEL
0301: EPYGAVSEDK NECMVKRFSV LNDQSERMGS GPRGSVSPDY ETREIKNIYV DCGNLNVAQN PGSLKATLPL ESGKVATMVS EKQNAAYFGP AGDKYSSTSR
0401: DSDSGEESSY SERESIPFSR TKSGMLLRPA HVRKTLAKFE ESKQSAVVQS ATRKKSGLAV EEEPQTQNAF LSEQNASKPF DAEDSIIKGI TNKFEKALSS
0501: EPPTDEANRM FLKPPRIHRS SNSKYNDTRR AMSADPATFG KGGMENSGDV EDIPSKTERV LSREKPGDEQ KNTEYPSGSR ELNPVKIVEG VNVVSGRTRS
0601: LVEKFERGEK TTHTEGASTT IEQNNNAVQE DPRKTSRQTG ETPVISTRRA RSTPARVMPI VLNRDSNVTS DEPPLTQPAR TSSFPVMPVI LNQASNVTYD
0701: EPSVALTQES RTSHARILPV TFNQATNITS EEASVTLRRQ RRNSAARVRP VLLSQATSHE CPVTSVRPLR TSPARVMPTK LNQSVNMTSD TSHIASMHRV
0801: SPTQMLATPT VIDQVADMTL DETHATQIQP ACDNMPQKEE PNISDREDDS DITENLMLTH NEFLSTLQSR LTKLQIVRHF WERSDVKGAI GALRKLTDQS
0901: VQADVISILT EKIEILTLDM FSQLVPVLTS LLGSRTERPV NVSLDMLLKL VAVFGTVIRS TVSAPRIVGV DLHANERLEI CQICSAGLHK IQRILPVLAR
1001: RGGLITRKAQ ELNLVLQEP
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4I7E1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.