Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH12069 | Soybean | nucleus | 80.91 | 81.93 |
| KRH37088 | Soybean | nucleus | 80.91 | 81.76 |
| Solyc09g010620.1.1 | Tomato | cytosol | 23.03 | 68.1 |
| Solyc09g065290.2.1 | Tomato | cytosol, plastid | 15.56 | 23.81 |
| Solyc02g091790.2.1 | Tomato | cytosol, nucleus | 14.11 | 21.66 |
| Solyc11g005550.1.1 | Tomato | cytosol | 12.86 | 20.74 |
| Solyc07g008860.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 16.18 | 19.65 |
| Solyc03g059100.1.1 | Tomato | nucleus | 12.86 | 19.02 |
| Solyc03g112530.2.1 | Tomato | nucleus | 17.22 | 17.26 |
| Solyc03g111740.2.1 | Tomato | cytosol | 14.32 | 14.32 |
| Solyc08g067040.2.1 | Tomato | nucleus | 16.18 | 10.21 |
| Solyc02g021360.2.1 | Tomato | cytosol | 15.77 | 9.52 |
| Solyc04g008720.2.1 | Tomato | cytosol | 15.56 | 9.26 |
| Solyc02g078800.2.1 | Tomato | extracellular | 14.73 | 6.9 |
Protein Annotations
| MapMan:16.4.5.1.3 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0000398 | GO:GO:0000974 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005662 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0071011 |
| GO:GO:0071013 | GO:GO:0080008 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:K4AZI9 |
| PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19923 |
| SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:Solyc01g094480.2 | EnsemblPlants:Solyc01g094480.2.1 | UniParc:UPI000276897B | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : |
Description
No Description!
Coordinates
chr1:+:85939842..85948054
Molecular Weight (calculated)
53502.6 Da
IEP (calculated)
9.421
GRAVY (calculated)
-0.488
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGPTMESEF PVEPQSLKKL SFKSLKRSLD LFSPIHGHFP LPDPESKKVR TSYKLNVEYG GIKGSAAEPN AKAGVQHQAQ PASAPSNTLA LPGPENTRDE
101: KTGNELALGP SIPGNGPTDV RFSGKSNAVV PSHGSSERNL STAAIMERIP SRWPRPIWRA PWKNYRVISG HLGWVRSVAV DPSNTWFCTG SADRTIKIWD
201: LASGRLKLTL TGHIEQVRGL AVSNKHTYMF SAGDDKLVKC WDLEQNKVIR SYHGHLSGVY CLALHPTIDI LFTGGRDSVC RVWDIRSKMQ IHALSGHDNT
301: VCSVFTRPMD PQVITGSHDS TIKFWDLRYG KTMATLTHHK KSVRAMAQHP TEDCFASASA DNIKKFSLPK GEFMHNMLSQ QKTIVNAMAI NNDGVMVTGG
401: DNGSMWFWDW KSGHNFQQSQ TIVQPGSLDS EAGIYALTYD VTGSRLISCE ADKTIKMWKE DETATPETHP LHFKPPKDIR RF
101: KTGNELALGP SIPGNGPTDV RFSGKSNAVV PSHGSSERNL STAAIMERIP SRWPRPIWRA PWKNYRVISG HLGWVRSVAV DPSNTWFCTG SADRTIKIWD
201: LASGRLKLTL TGHIEQVRGL AVSNKHTYMF SAGDDKLVKC WDLEQNKVIR SYHGHLSGVY CLALHPTIDI LFTGGRDSVC RVWDIRSKMQ IHALSGHDNT
301: VCSVFTRPMD PQVITGSHDS TIKFWDLRYG KTMATLTHHK KSVRAMAQHP TEDCFASASA DNIKKFSLPK GEFMHNMLSQ QKTIVNAMAI NNDGVMVTGG
401: DNGSMWFWDW KSGHNFQQSQ TIVQPGSLDS EAGIYALTYD VTGSRLISCE ADKTIKMWKE DETATPETHP LHFKPPKDIR RF
001: MPAPTTEIEP IEAQSLKKLS LKSLKRSLEL FSPVHGQFPP PDPEAKQIRL SHKMKVAFGG VEPVVSQPPR QPDRINEQPG PSNALSLAAP EGSKSTQKGA
101: TESAIVVGPT LLRPILPKGL NYTGSSGKST TIIPANVSSY QRNLSTAALM ERIPSRWPRP EWHAPWKNYR VIQGHLGWVR SVAFDPSNEW FCTGSADRTI
201: KIWDVATGVL KLTLTGHIEQ VRGLAVSNRH TYMFSAGDDK QVKCWDLEQN KVIRSYHGHL SGVYCLALHP TLDVLLTGGR DSVCRVWDIR TKMQIFALSG
301: HDNTVCSVFT RPTDPQVVTG SHDTTIKFWD LRYGKTMSTL THHKKSVRAM TLHPKENAFA SASADNTKKF SLPKGEFCHN MLSQQKTIIN AMAVNEDGVM
401: VTGGDNGSIW FWDWKSGHSF QQSETIVQPG SLESEAGIYA ACYDNTGSRL VTCEADKTIK MWKEDENATP ETHPINFKPP KEIRRF
101: TESAIVVGPT LLRPILPKGL NYTGSSGKST TIIPANVSSY QRNLSTAALM ERIPSRWPRP EWHAPWKNYR VIQGHLGWVR SVAFDPSNEW FCTGSADRTI
201: KIWDVATGVL KLTLTGHIEQ VRGLAVSNRH TYMFSAGDDK QVKCWDLEQN KVIRSYHGHL SGVYCLALHP TLDVLLTGGR DSVCRVWDIR TKMQIFALSG
301: HDNTVCSVFT RPTDPQVVTG SHDTTIKFWD LRYGKTMSTL THHKKSVRAM TLHPKENAFA SASADNTKKF SLPKGEFCHN MLSQQKTIIN AMAVNEDGVM
401: VTGGDNGSIW FWDWKSGHSF QQSETIVQPG SLESEAGIYA ACYDNTGSRL VTCEADKTIK MWKEDENATP ETHPINFKPP KEIRRF
Arabidopsis Description
PRL1Protein pleiotropic regulatory locus 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42384]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.