Factsheet for Solyc11g005550.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010145	Potato	cytosol	98.66	98.66
VIT_09s0002g01580.t01	Wine grape	cytosol	83.61	83.61
KRH59511	Soybean	cytosol, nucleus	82.61	82.33
Bra024323.1-P	Field mustard	cytosol	80.6	81.14
CDY08856	Canola	cytosol	80.6	81.14
CDX84544	Canola	cytosol	81.27	81.0
GSMUA_Achr6P13100_001	Banana	cytosol	81.61	80.26
AT5G64730.1	Thale cress	cytosol	79.93	79.93
KRH43376	Soybean	nucleus	82.27	76.64
Os02t0543400-01	Rice	cytosol, mitochondrion	72.91	72.43
TraesCS6B01G275200.2	Wheat	cytosol	71.57	71.33
EES05216	Sorghum	cytosol	72.24	71.29
TraesCS6D01G232000.1	Wheat	cytosol	71.24	71.0
TraesCS6A01G250200.1	Wheat	cytosol	71.24	71.0
Zm00001d050708_P002	Maize	cytosol	71.57	70.63
HORVU6Hr1G063000.1	Barley	cytosol	71.91	67.61
HORVU0Hr1G027010.1	Barley	plastid	71.91	59.89
Solyc09g065290.2.1	Tomato	cytosol, plastid	30.43	28.89
Solyc02g091790.2.1	Tomato	cytosol, nucleus	27.76	26.43
Solyc03g059100.1.1	Tomato	nucleus	25.42	23.31
Solyc09g010620.1.1	Tomato	cytosol	10.37	19.02
Solyc03g111740.2.1	Tomato	cytosol	26.09	16.18
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	21.4	16.12
Solyc03g112530.2.1	Tomato	nucleus	22.07	13.72
Solyc01g094480.2.1	Tomato	nucleus	20.74	12.86
Solyc08g067040.2.1	Tomato	nucleus	18.39	7.2
Solyc02g021360.2.1	Tomato	cytosol	17.06	6.39
Solyc04g008720.2.1	Tomato	cytosol	15.38	5.68
Solyc02g078800.2.1	Tomato	extracellular	17.06	4.96

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4D4G8	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22847	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:Solyc11g005550.1	EnsemblPlants:Solyc11g005550.1.1	UniParc:UPI00027698FB	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:+:403708..409767

Molecular Weight (calculated)

33102.1 Da

IEP (calculated)

7.276

GRAVY (calculated)

-0.211

Length

299 amino acids

Sequence
(BLAST)

001: MTAVQLPKQK VHVLEGHAGA VLAARFNSNG EYALSCGKDR TIRLWNPHRG VHIKTYKAHG REVRDVHVTQ DNSKLCSCGG DRQVFYWDVS TGHVIRKFRG
101: HDSEVNAVKF NEYASVVVSA GYDKSLRVWD CKSRSTEPIQ IIDTFLDSVM SICLTKTEII AGSVDGTVRT FDIRVGREIS DNLGQPVNCI SLSNDGNCIL
201: ASCLDSTLRL LDRSSGELLQ EYKGHICKSF KTDCCLTNSD AHVAGGSEDG YIYFWDLVDA SVVSSFRAHD LVVTSVSYHP KENCMITSSV DSTVRVWKA

Best Arabidopsis Sequence Match ( AT5G64730.1 )
(BLAST)

001: MSATELPTKE AHILKGHEGA VLAARFNGDG NYALTCGKDR TIRLWNPHRG ILIKTYKSHG REVRDVHVTS DNAKFCSCGG DRQVYYWDVS TGRVIRKFRG
101: HDGEVNAVKF NDSSSVVVSA GFDRSLRVWD CRSHSVEPVQ IIDTFLDTVM SVVLTKTEII GGSVDGTVRT FDMRIGREMS DNLGQPVNCI SISNDGNCVL
201: AGCLDSTLRL LDRTTGELLQ VYKGHISKSF KTDCCLTNSD AHVIGGSEDG LVFFWDLVDA KVLSKFRAHD LVVTSVSYHP KEDCMLTSSV DGTIRVWKK

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.