Factsheet for Solyc09g010620.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g021470.2.1
Solyc02g021650.2.1
Solyc02g067030.2.1
Solyc02g070460.2.1
Solyc04g009950.2.1
Solyc06g007110.2.1
Solyc06g009750.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15900.1	Solyc04g009950.2.1	AT1G09770.1	17575050
AT4G15900.1	Solyc02g067030.2.1	AT3G29160.1	10220464
AT4G15900.1	Solyc06g009750.2.1	AT4G02150.1	9765207
AT4G15900.1	Solyc02g021650.2.1	AT4G05420.1	18223036
AT4G15900.1	Solyc02g021470.2.1	AT5G46210.1	18223036
AT4G15900.1	Solyc02g070460.2.1	AT5G46210.1	18223036
AT4G15900.1	Solyc06g007110.2.1	AT5G58720.1	10220464

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023040	Potato	mitochondrion	84.66	44.95
GSMUA_Achr8P10200_001	Banana	cytosol	19.02	34.83
GSMUA_Achr8P10210_001	Banana	cytosol	16.56	28.42
Bra007287.1-P	Field mustard	cytosol	63.8	26.0
CDY44171	Canola	cytosol	23.31	24.52
Solyc01g094480.2.1	Tomato	nucleus	68.1	23.03
VIT_05s0077g02310.t01	Wine grape	cytosol	68.1	22.93
Bra012753.1-P	Field mustard	cytosol	65.64	22.25
AT4G15900.1	Thale cress	cytosol	66.26	22.22
CDY27174	Canola	cytosol	20.86	22.22
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	65.64	22.02
Os03t0339100-01	Rice	nucleus	63.19	21.82
TraesCS3A01G175600.2	Wheat	plastid	63.19	21.55
TraesCS3D01G181100.1	Wheat	cytosol	63.19	21.5
AT3G16650.1	Thale cress	cytosol	63.19	21.5
TraesCS3B01G205300.1	Wheat	cytosol	63.19	21.5
KXG25821	Sorghum	cytosol	61.96	21.09
Zm00001d033309_P003	Maize	cytosol	61.96	20.91
Bra021188.1-P	Field mustard	cytosol	62.58	20.52
HORVU3Hr1G035450.7	Barley	mitochondrion	63.19	20.12
Solyc09g065290.2.1	Tomato	cytosol, plastid	23.93	12.38
Solyc02g091790.2.1	Tomato	cytosol, nucleus	23.31	12.1
Solyc03g059100.1.1	Tomato	nucleus	23.93	11.96
GSMUA_Achr8P10190_001	Banana	cytosol, plastid	19.63	11.59
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	25.77	10.58
Solyc11g005550.1.1	Tomato	cytosol	19.02	10.37
Solyc03g112530.2.1	Tomato	nucleus	22.09	7.48
Solyc03g111740.2.1	Tomato	cytosol	17.18	5.81
Solyc02g021360.2.1	Tomato	cytosol	25.15	5.14
Solyc04g008720.2.1	Tomato	cytosol	23.93	4.81
Solyc08g067040.2.1	Tomato	nucleus	19.63	4.19
Solyc02g078800.2.1	Tomato	extracellular	25.15	3.98

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000398	GO:GO:0000974	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005662	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0071011
GO:GO:0071013	GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4CR89
PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19923
SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc09g010620.1	EnsemblPlants:Solyc09g010620.1.1	UniParc:UPI000276AD1E	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

No Description!

Coordinates

chr9:+:3960969..3961460

Molecular Weight (calculated)

18645.5 Da

IEP (calculated)

8.629

GRAVY (calculated)

-0.222

Length

163 amino acids

Sequence
(BLAST)

001: MFSAGDDKQV TFWDLEQNKA IHSFHGHLHG VYCLAIHPTI YVFYTGSRDC VCRVWDIRTK TNIHVFSGHE NTISSTMTLL SHPQVVVTSS HDSTMKLWDI
101: RYGKTMETLT HHKKSIRVMA RTKVQPGLSI DTDVAIYALT YDVTGTILIT CEGDKTIKMW KQR

Best Arabidopsis Sequence Match ( AT4G15900.1 )
(BLAST)

001: MPAPTTEIEP IEAQSLKKLS LKSLKRSLEL FSPVHGQFPP PDPEAKQIRL SHKMKVAFGG VEPVVSQPPR QPDRINEQPG PSNALSLAAP EGSKSTQKGA
101: TESAIVVGPT LLRPILPKGL NYTGSSGKST TIIPANVSSY QRNLSTAALM ERIPSRWPRP EWHAPWKNYR VIQGHLGWVR SVAFDPSNEW FCTGSADRTI
201: KIWDVATGVL KLTLTGHIEQ VRGLAVSNRH TYMFSAGDDK QVKCWDLEQN KVIRSYHGHL SGVYCLALHP TLDVLLTGGR DSVCRVWDIR TKMQIFALSG
301: HDNTVCSVFT RPTDPQVVTG SHDTTIKFWD LRYGKTMSTL THHKKSVRAM TLHPKENAFA SASADNTKKF SLPKGEFCHN MLSQQKTIIN AMAVNEDGVM
401: VTGGDNGSIW FWDWKSGHSF QQSETIVQPG SLESEAGIYA ACYDNTGSRL VTCEADKTIK MWKEDENATP ETHPINFKPP KEIRRF

Arabidopsis Description

PRL1Protein pleiotropic regulatory locus 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42384]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.