Factsheet for Solyc02g070460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005840.2.1
Solyc01g103010.2.1
Solyc01g104600.2.1
Solyc02g021650.2.1
Solyc02g093920.2.1
Solyc04g080160.2.1
Solyc06g073150.2.1
Solyc08g074370.2.1
Solyc09g010620.1.1
Solyc09g031610.2.1
Solyc11g017300.1.1
Solyc12g005950.1.1
Solyc12g088340.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46210.1	Solyc12g088340.1.1	AT1G19750.1	20622147
AT5G46210.1	Solyc06g073150.2.1	AT1G71230.1	16844902
AT5G46210.1	Solyc11g017300.1.1	AT1G71230.1	16844902
AT5G46210.1	Solyc01g103010.2.1	AT2G02560.1	16844902
AT5G46210.1	Solyc12g005950.1.1	AT2G32950.1	16844902
AT5G46210.1	Solyc01g005840.2.1	AT3G13550.1	16844902
AT5G46210.1	Solyc02g021650.2.1	AT4G05420.1	16792691
AT5G46210.1	Solyc02g021650.2.1	AT4G05420.1	16844902
AT5G46210.1	Solyc02g021650.2.1	AT4G05420.1	18223036
AT5G46210.1	Solyc02g021650.2.1	AT4G05420.1	18551167
AT5G46210.1	Solyc01g104600.2.1	AT4G14110.1	16844902
AT5G46210.1	Solyc09g010620.1.1	AT4G15900.1	18223036
AT5G46210.1	Solyc02g021650.2.1	AT4G21100.1	16792691
AT5G46210.1	Solyc08g074370.2.1	AT4G31160.1	18552200
AT5G46210.1	Solyc02g093920.2.1	AT5G14250.1	16844902
AT5G46210.1	Solyc04g080160.2.1	AT5G42970.1	16844902
AT5G46210.1	Solyc09g031610.2.1	AT5G58760.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21073	Soybean	cytosol	32.92	92.31
Solyc02g021470.2.1	Tomato	cytosol, nucleus, plastid	85.66	87.52
VIT_10s0003g03710.t01	Wine grape	cytosol	83.54	83.54
KRH11182	Soybean	cytosol, plastid	82.04	83.5
KRH58640	Soybean	cytosol	79.55	82.32
KRH42547	Soybean	cytosol	78.43	81.79
CDY33461	Canola	cytosol	76.43	80.55
Bra025031.1-P	Field mustard	cytosol	76.18	80.39
CDX77644	Canola	cytosol	76.56	80.05
TraesCS5A01G425300.1	Wheat	cytosol	70.7	79.75
CDY43957	Canola	cytosol	77.06	79.64
CDX87735	Canola	cytosol	77.31	79.49
Bra022023.1-P	Field mustard	plastid	77.56	79.24
CDY03235	Canola	plastid	77.18	78.35
AT5G46210.1	Thale cress	cytosol	77.31	78.28
CDY35152	Canola	plastid	76.68	78.24
Bra017569.1-P	Field mustard	plastid	76.56	78.12
GSMUA_Achr4P22850_001	Banana	cytosol	77.93	77.83
KRH21072	Soybean	plastid	46.01	76.4
TraesCS5B01G427400.1	Wheat	cytosol	74.19	74.1
EER93338	Sorghum	plastid	76.06	73.14
Zm00001d034361_P001	Maize	cytosol, plastid	75.56	72.84
TraesCS5D01G433700.3	Wheat	cytosol, plastid	74.94	72.41
HORVU5Hr1G103580.2	Barley	plastid	75.06	72.27
GSMUA_Achr7P01270_001	Banana	cytosol	77.68	71.2
Zm00001d013116_P002	Maize	plastid	75.69	70.58
Solyc01g010820.2.1	Tomato	cytosol	38.15	41.69
Solyc02g087900.2.1	Tomato	cytosol	37.16	40.65
Solyc01g067170.1.1	Tomato	mitochondrion, plastid	6.48	38.81
Solyc01g067210.2.1	Tomato	cytosol	24.06	33.92
Solyc06g084520.2.1	Tomato	cytosol	31.17	33.78
Solyc01g067140.1.1	Tomato	cytosol	16.58	32.92
Solyc09g074680.2.1	Tomato	cytosol	30.3	32.84
Solyc01g067100.2.1	Tomato	cytosol	29.8	32.21
Solyc09g010050.1.1	Tomato	cytosol	27.93	30.48
Solyc06g008710.1.1	Tomato	cytosol	27.43	29.61
Solyc05g018040.1.1	Tomato	cytosol	8.98	28.69
Solyc01g067270.2.1	Tomato	cytosol	6.23	21.83
Solyc01g099290.2.1	Tomato	cytosol	6.73	20.3
Solyc01g067120.2.1	Tomato	cytosol	3.99	19.05
Solyc01g067260.2.1	Tomato	plastid	4.11	15.79
Solyc01g067200.1.1	Tomato	cytosol	3.74	15.62
Solyc06g008080.1.1	Tomato	cytosol	5.86	15.36

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.3.1	MapMan:26.1.1.3.1	ncoils:Coil
InterPro:Cullin_CS	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031461	GO:GO:0031625
GO:GO:0042787	GO:GO:0061630	GO:GO:0080008	InterPro:IPR016158	InterPro:IPR036388	UniProt:K4B827
PFAM:PF00888	PFAM:PF10557	ScanProsite:PS01256	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF27
SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632	EnsemblPlantsGene:Solyc02g070460.2
EnsemblPlants:Solyc02g070460.2.1	UniParc:UPI000276884D	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

No Description!

Coordinates

chr2:+:40199109..40213876

Molecular Weight (calculated)

92330.7 Da

IEP (calculated)

8.486

GRAVY (calculated)

-0.448

Length

802 amino acids

Sequence
(BLAST)

001: MSQPNKRSSS LSTPPPSPLS RSMKKAKSQA AAATDDNKNG QQQQQHHHHH HKDEPCVSMI QYSGGGVTSN LSRKKATPPQ PPKKQLVIKL NKAKPTLPTN
101: FEENTWATLK SAISAIFLKQ PDPCDLEKLY QAVTDLCLHK MGGSLYQRIE KECEAHIVAV LQSLVGQSED LVVFLSVVQR CWQDFCDQML MIRGIALYLD
201: RTYVKQTPNG HSLWEMGLQL FRKHLCLASE VEHKIVFGLL QMIESERLGE AVDRALLNHL LKMFTALGIY AESFEKPFVE RTSEFYAAEG VKYMQQSDVP
301: DYLKHVELRL HEEHDRCLHY LDSSTRKPLI STTERQLLER HVAAILDKGF MMLMDGKRIE DLRRMYSLFP RVEALESLKQ TLSLYIRKNG QSIVHDDEKD
401: KDMVSSLLEF KASVDTIWEE SFSKNEAFGN TIKDAFGHLI NVCENRPAEL IAKFLDEKLR AGNKGTSEEE LEGILDKVLV LFRFIQGKDV FEAFYKKDLA
501: KRLLLGKSAS IDAEKSMISK LKTECGSQFT NKLEGMFKDI ELSKEINESF KQSSQARKKL PTGIEMSVHV LTTGYWPTYP PMDVRLPHEL NIYQDIFKEF
601: YLNKYSGRRL MWQNSLGHCV LKAEFPKGKK ELAVSLFQAV VLMLFNDAEK LSFLDMMEAT RIEDKELRRT LQSLACGKVR VLQKIPKGRD VEDNDTFVFN
701: DQFTTPLYRI KVNAIQMKET VEENTNTTER VFQDRQYQVD AAIVRIMKTR KVLSHTLLIT ELFQQLKFPV KPADLKKRIE SLIEREYLER DKNNPQVYNY
801: LA

Best Arabidopsis Sequence Match ( AT5G46210.1 )
(BLAST)

001: MSLPTKRSTF SAASASDDSS YSSPPMKKAK NDLHHSPQHP NTADKVVGFH MEEDPTPAAA NLSRKKATLP QPTKKFVIKL NKAKPTLPTN FEENTWEKLQ
101: SAIRAIFLKK KISFDLESLY QAVDNLCLHK LDGKLYDQIE KECEEHISAA LQSLVGQNTD LTVFLSRVEK CWQDFCDQML MIRSIALTLD RKYVIQNPNV
201: RSLWEMGLQL FRKHLSLAPE VEQRTVKGLL SMIEKERLAE AVNRTLLSHL LKMFTALGIY MESFEKPFLE GTSEFYAAEG MKYMQQSDVP EYLKHVEGRL
301: HEENERCILY IDAVTRKPLI TTVERQLLER HILVVLEKGF TTLMDGRRTE DLQRMQTLFS RVNALESLRQ ALSSYVRKTG QKIVMDEEKD KDMVQSLLDF
401: KASLDIIWEE SFYKNESFGN TIKDSFEHLI NLRQNRPAEL IAKFLDEKLR AGNKGTSEEE LESVLEKVLV LFRFIQGKDV FEAFYKKDLA KRLLLGKSAS
501: IDAEKSMISK LKTECGSQFT NKLEGMFKDI ELSKEINESF KQSSQARTKL PSGIEMSVHV LTTGYWPTYP PMDVKLPHEL NVYQDIFKEF YLSKYSGRRL
601: MWQNSLGHCV LKADFSKGKK ELAVSLFQAV VLMLFNDAMK LSFEDIKDST SIEDKELRRT LQSLACGKVR VLQKNPKGRD VEDGDEFEFN DEFAAPLYRI
701: KVNAIQMKET VEENTSTTER VFQDRQYQID AAIVRIMKTR KVLSHTLLIT ELFQQLKFPI KPADLKKRIE SLIDREYLER EKSNPQIYNY LA

Arabidopsis Description

CUL4Cullin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.