Factsheet for Solyc02g093920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005840.2.1
Solyc01g008840.2.1
Solyc01g090290.2.1
Solyc01g091650.2.1
Solyc01g104600.2.1
Solyc02g021470.2.1
Solyc02g070460.2.1
Solyc02g093920.2.1
Solyc04g080160.2.1
Solyc06g073150.2.1
Solyc10g005660.2.1
Solyc10g081150.1.1
Solyc11g017300.1.1
Solyc11g062430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14250.1	Solyc01g090290.2.1	AT1G02090.1	12615944
AT5G14250.1	Solyc01g090290.2.1	AT1G02090.1	15703063
AT5G14250.1	Solyc06g073150.2.1	AT1G22920.1	11742986
AT5G14250.1	Solyc11g017300.1.1	AT1G22920.1	11742986
AT5G14250.1	Solyc06g073150.2.1	AT1G22920.1	15703063
AT5G14250.1	Solyc11g017300.1.1	AT1G22920.1	15703063
AT5G14250.1	Solyc06g073150.2.1	AT1G71230.1	11742986
AT5G14250.1	Solyc11g017300.1.1	AT1G71230.1	11742986
AT5G14250.1	Solyc01g008840.2.1	AT2G26990.1	12615944
AT5G14250.1	Solyc10g081150.1.1	AT2G26990.1	12615944
AT5G14250.1	Solyc11g062430.1.1	AT2G26990.1	12615944
AT5G14250.1	Solyc01g008840.2.1	AT2G26990.1	15703063
AT5G14250.1	Solyc10g081150.1.1	AT2G26990.1	15703063
AT5G14250.1	Solyc11g062430.1.1	AT2G26990.1	15703063
AT5G14250.1	Solyc01g005840.2.1	AT3G13550.1	11877375
AT5G14250.1	Solyc01g091650.2.1	AT3G61140.1	12615944
AT5G14250.1	Solyc01g091650.2.1	AT3G61140.1	15703063
AT5G14250.1	Solyc01g104600.2.1	AT4G14110.1	11742986
AT5G14250.1	Solyc01g104600.2.1	AT4G14110.1	12615944
AT5G14250.1	Solyc01g104600.2.1	AT4G14110.1	15703063
AT5G14250.1	Solyc02g093920.2.1	AT5G14250.1	12615944
AT5G14250.1	Solyc04g080160.2.1	AT5G42970.1	11742986
AT5G14250.1	Solyc04g080160.2.1	AT5G42970.1	12615944
AT5G14250.1	Solyc04g080160.2.1	AT5G42970.1	15703063
AT5G14250.1	Solyc02g021470.2.1	AT5G46210.1	16844902
AT5G14250.1	Solyc02g070460.2.1	AT5G46210.1	16844902
AT5G14250.1	Solyc10g005660.2.1	AT5G56280.1	11701877
AT5G14250.1	Solyc10g005660.2.1	AT5G56280.1	12615944
AT5G14250.1	Solyc10g005660.2.1	AT5G56280.1	15703063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052100	Potato	cytosol	97.9	97.9
VIT_14s0171g00270.t01	Wine grape	cytosol	75.7	76.42
KRH57651	Soybean	cytosol	72.9	73.76
KRG94317	Soybean	cytosol	72.43	73.29
GSMUA_Achr11P...	Banana	cytosol	68.22	69.19
GSMUA_AchrUn_...	Banana	cytosol	62.38	65.12
Os08t0119000-01	Rice	cytosol	64.72	65.02
CDX91076	Canola	cytosol	63.55	63.85
EES13281	Sorghum	cytosol	63.32	63.17
CDX85608	Canola	cytosol	62.62	63.06
Bra023453.1-P	Field mustard	cytosol	62.38	62.82
Bra006246.1-P	Field mustard	cytosol	61.45	62.47
CDX78568	Canola	cytosol	61.45	62.47
Zm00001d049652_P001	Maize	cytosol	60.75	61.18
AT5G14250.1	Thale cress	cytosol	61.22	61.07
TraesCS7B01G216600.2	Wheat	cytosol	60.75	60.89
TraesCS7D01G312600.2	Wheat	cytosol	60.51	60.66
Zm00001d035130_P001	Maize	cytosol	63.55	58.37
TraesCS7A01G315600.1	Wheat	cytosol	57.94	58.35
Zm00001d028517_P001	Maize	cytosol	14.72	57.27
HORVU7Hr1G075150.4	Barley	mitochondrion	60.51	53.18
Bra006326.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	30.84	52.8
CDX78656	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	30.61	52.19
CDX70553	Canola	mitochondrion	42.76	50.14
CDY26433	Canola	mitochondrion	32.94	32.05

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.3.3.1.3	InterPro:CSN3	GO:GO:0000338	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0006511
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009056	GO:GO:0009987
GO:GO:0010971	GO:GO:0019538	InterPro:IPR000717	UniProt:K4BDI8	InterPro:PCI_dom	PFAM:PF01399
PFscan:PS50250	PANTHER:PTHR10758	PANTHER:PTHR10758:SF1	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
EnsemblPlantsGene:Solyc02g093920.2	EnsemblPlants:Solyc02g093920.2.1	UniParc:UPI00027688CB	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

COP9 signalosome complex subunit 3 [Source:Projected from Arabidopsis thaliana (AT5G14250) UniProtKB/Swiss-Prot;Acc:Q8W575]

Coordinates

chr2:-:54608780..54613725

Molecular Weight (calculated)

48670.9 Da

IEP (calculated)

6.190

GRAVY (calculated)

-0.122

Length

428 amino acids

Sequence
(BLAST)

001: MNLNMNSMES VVAQIQGLSS NSSDITQLHN FLKQSEELLH SDFSRLLSSL AELDPSIHSL GFLYILEACI SFPVAKEHVS ELLVSVARFI NSCSTEQIQL
101: APNKFISVCK KFKDHVFGLE TPIRGVAPML TAIRKLQSSP EQLTTLHADF LLLCLLAKCY KTGFSVLEDD IYEIDQPREF FLYCYYGGMV CIGQKQFRKA
201: LELLHNVVTA PMSTLNAIAV EAYKKYILVS LIHLGQFSTS FPKYTSSVAQ RNLKNFSQPY LELSNSYGTG RISELETFVQ TNKEKFESDN NLGLVMQVVS
301: SMYKRNIQRL TQTYLTLSLQ DIANTVQLRD PKQAEMHVLQ MIEDGEIYAT INQKDGMVRF LEDPEQYKTC GMIEHIDSSI KRLMAVSKKL TSMDELMSCD
401: PMYLGKVGRE RQRFDFDDFD GVPQKFTI

Best Arabidopsis Sequence Match ( AT5G14250.1 )
(BLAST)

001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM

Arabidopsis Description

CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.