Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006246.1-P | Field mustard | cytosol | 98.1 | 98.1 |
| CDX91076 | Canola | cytosol | 87.89 | 86.85 |
| CDX85608 | Canola | cytosol | 87.41 | 86.59 |
| AT5G14250.1 | Thale cress | cytosol | 81.0 | 79.49 |
| CDX78656 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 44.89 | 75.3 |
| CDX70553 | Canola | mitochondrion | 63.18 | 72.88 |
| KRH57651 | Soybean | cytosol | 65.56 | 65.25 |
| VIT_14s0171g00270.t01 | Wine grape | cytosol | 65.08 | 64.62 |
| KRG94317 | Soybean | cytosol | 64.13 | 63.83 |
| Solyc02g093920.2.1 | Tomato | cytosol | 62.47 | 61.45 |
| PGSC0003DMT400052100 | Potato | cytosol | 62.23 | 61.22 |
| GSMUA_Achr11P... | Banana | cytosol | 58.43 | 58.29 |
| GSMUA_AchrUn_... | Banana | cytosol | 54.63 | 56.1 |
| Os08t0119000-01 | Rice | cytosol | 55.58 | 54.93 |
| EES13281 | Sorghum | cytosol | 55.82 | 54.78 |
| Zm00001d049652_P001 | Maize | cytosol | 52.73 | 52.24 |
| TraesCS7B01G216600.2 | Wheat | cytosol | 52.73 | 51.99 |
| TraesCS7D01G312600.2 | Wheat | cytosol | 52.49 | 51.76 |
| Zm00001d035130_P001 | Maize | cytosol | 55.58 | 50.21 |
| TraesCS7A01G315600.1 | Wheat | cytosol | 49.41 | 48.94 |
| Zm00001d028517_P001 | Maize | cytosol | 12.35 | 47.27 |
| HORVU7Hr1G075150.4 | Barley | mitochondrion | 52.26 | 45.17 |
| CDY26433 | Canola | mitochondrion | 47.03 | 45.0 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.3 | EnsemblPlants:CDX78568 | ProteinID:CDX78568 | ProteinID:CDX78568.1 | InterPro:CSN3 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008180 | EnsemblPlantsGene:GSBRNA2T00129978001 |
| InterPro:IPR000717 | InterPro:PCI_dom | PFAM:PF01399 | PFscan:PS50250 | PANTHER:PTHR10758 | PANTHER:PTHR10758:SF1 |
| SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI0004EF274A | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
BnaA03g04800D
Coordinates
chrLK031815:+:1339303..1341889
Molecular Weight (calculated)
47178.6 Da
IEP (calculated)
7.041
GRAVY (calculated)
0.043
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTVEAVIAS IQGLSASSGD LYALHDVLKG AVDSLRTDSE LQLSTLDQLD PSKHSLGYLY LLDVLTYGPV SKEKVLLIAR FINACDAVQI RLASEKFVSL
101: CKRFKDKVLE LRDPLLGVAP LLAAVRKVQV STKRLTALHP DCLQLCLLAK CYKAGFSILS DDILEVDQPR EFYLYCYYGG MICIGLKRFQ KALELLYNVV
201: TAPMHIVNAI ALEAYKKYIL VTLIHSGQFS ISLPKCASTT AKSSFKTWCT PYIEVGMRYN DGKISELEAV VVANSSDFEK DNNLGLVKQA VASLYKRNIL
301: RLTQKYLTLS LQDIANMVQL ANAKEAEMRV LQMIQDGQIH ALINQKDGMV RFLEDPEQYK TSEMIEIMDS VIQRTIGLSK NLIAMDESLS CDPLYLGKVG
401: RERQRYDFGE DFDTVPQKFS M
101: CKRFKDKVLE LRDPLLGVAP LLAAVRKVQV STKRLTALHP DCLQLCLLAK CYKAGFSILS DDILEVDQPR EFYLYCYYGG MICIGLKRFQ KALELLYNVV
201: TAPMHIVNAI ALEAYKKYIL VTLIHSGQFS ISLPKCASTT AKSSFKTWCT PYIEVGMRYN DGKISELEAV VVANSSDFEK DNNLGLVKQA VASLYKRNIL
301: RLTQKYLTLS LQDIANMVQL ANAKEAEMRV LQMIQDGQIH ALINQKDGMV RFLEDPEQYK TSEMIEIMDS VIQRTIGLSK NLIAMDESLS CDPLYLGKVG
401: RERQRYDFGE DFDTVPQKFS M
001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
Arabidopsis Description
CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.