Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012303.1-P | Field mustard | nucleus | 98.46 | 98.46 |
| CDY00413 | Canola | cytosol | 97.69 | 97.69 |
| CDY38053 | Canola | cytosol | 90.77 | 90.08 |
| AT1G02090.1 | Thale cress | cytosol | 88.08 | 88.08 |
| CDX90073 | Canola | cytosol | 20.0 | 83.87 |
| Zm00001d023916_P001 | Maize | cytosol | 14.23 | 78.72 |
| Zm00001d020231_P001 | Maize | cytosol | 20.0 | 76.47 |
| VIT_15s0021g01580.t01 | Wine grape | cytosol | 73.85 | 74.13 |
| KRH13242 | Soybean | cytosol | 71.92 | 72.2 |
| KRH20583 | Soybean | cytosol | 71.54 | 71.81 |
| Solyc01g090290.2.1 | Tomato | cytosol | 70.77 | 71.04 |
| CDY15130 | Canola | extracellular | 30.38 | 70.54 |
| GSMUA_Achr2P12070_001 | Banana | cytosol | 65.38 | 65.13 |
| GSMUA_Achr4P21630_001 | Banana | cytosol | 62.69 | 62.93 |
| PGSC0003DMT400067022 | Potato | cytosol | 70.38 | 61.82 |
| Os07t0490800-01 | Rice | cytosol, plasma membrane | 28.46 | 61.16 |
| TraesCS2D01G239100.1 | Wheat | golgi | 60.38 | 60.15 |
| TraesCS2B01G253600.2 | Wheat | nucleus | 60.0 | 59.77 |
| Zm00001d004607_P001 | Maize | nucleus | 37.69 | 59.39 |
| TraesCS2A01G228300.1 | Wheat | nucleus | 59.62 | 59.39 |
| Zm00001d006410_P013 | Maize | nucleus | 59.62 | 59.39 |
| KXG36255 | Sorghum | nucleus | 59.23 | 59.0 |
| HORVU2Hr1G050230.9 | Barley | nucleus | 59.23 | 59.0 |
| KRH01071 | Soybean | nucleus | 61.15 | 56.58 |
| Zm00001d021522_P002 | Maize | cytosol, plasma membrane | 59.23 | 55.4 |
Protein Annotations
| EnsemblPlants:CDY01302 | EnsemblPlantsGene:GSBRNA2T00112242001 | Gene3D:1.25.40.570 | InterPro:IPR000717 | InterPro:PCI_dom | PANTHER:PTHR15350 |
| PANTHER:PTHR15350:SF5 | PFscan:PS50250 | ProteinID:CDY01302 | ProteinID:CDY01302.1 | SMART:SM00088 | SMART:SM00753 |
| UniParc:UPI0004EEE4F3 | MapMan:19.2.3.3.1.7 | : | : | : | : |
Description
BnaA07g10750D
Coordinates
chrLK031926:+:47490..49265
Molecular Weight (calculated)
29458.4 Da
IEP (calculated)
5.983
GRAVY (calculated)
-0.430
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMEQKQAEI IDQLVRRAST CNGDSLVPII VDATSHPSLF AFSEILALPN VAQLEGTSDS VYVDVLRLFA HGTWGDYKCN ASRIPQLSPD QILKLKQLTV
101: LTLAESNKVL PYDTLMVELD VTNVRELEDF LINDCMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSDWLNT SENLLVSIQD KIKWADNMSE
201: MDKKHRKEAE EGVEELKKSL SMKGDFGSRG HNEMFGEPSG VMNYKEDGMR SKRRRHPVRR
101: LTLAESNKVL PYDTLMVELD VTNVRELEDF LINDCMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSDWLNT SENLLVSIQD KIKWADNMSE
201: MDKKHRKEAE EGVEELKKSL SMKGDFGSRG HNEMFGEPSG VMNYKEDGMR SKRRRHPVRR
001: MDIEQKQAEI IDQLVKRAST CKSEALGPLI IEATSHPSLF AFSEILALPN VAQLEGTTDS VYLDLLRLFA HGTWGDYKCN ATRLPHLSPD QILKLKQLTV
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKGDVDIRG NKEMFGEPSG VMDYEEDGIR PKRRRHPVTR
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKGDVDIRG NKEMFGEPSG VMDYEEDGIR PKRRRHPVTR
Arabidopsis Description
CSN7COP9 signalosome complex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q94JU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.