CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 3
golgi 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, mitochondrion, plasma membrane, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67853
CDX70553
CDX71478
CDX71533
CDX77644
CDX78568
CDX78656
CDX83249
CDX85608
CDX87735
CDX90073
CDX91076
CDY00413
CDY01192
CDY01302
CDY02426
CDY03235
CDY04472
CDY04768
CDY12369
CDY12734
CDY15130
CDY21400
CDY22374
CDY23617
CDY25761
CDY26433
CDY27125
CDY32798
CDY33461
CDY35152
CDY38053
CDY38538
CDY43957
CDY45683
CDY49389
CDY52333
CDY59253
CDY61016
CDY65304

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14250.1	CDX90073	AT1G02090.1	12615944
AT5G14250.1	CDY00413	AT1G02090.1	12615944
AT5G14250.1	CDY01302	AT1G02090.1	12615944
AT5G14250.1	CDY15130	AT1G02090.1	12615944
AT5G14250.1	CDY38053	AT1G02090.1	12615944
AT5G14250.1	CDX90073	AT1G02090.1	15703063
AT5G14250.1	CDY00413	AT1G02090.1	15703063
AT5G14250.1	CDY01302	AT1G02090.1	15703063
AT5G14250.1	CDY15130	AT1G02090.1	15703063
AT5G14250.1	CDY38053	AT1G02090.1	15703063
AT5G14250.1	CDY04768	AT1G22920.1	11742986
AT5G14250.1	CDY21400	AT1G22920.1	11742986
AT5G14250.1	CDY25761	AT1G22920.1	11742986
AT5G14250.1	CDY04768	AT1G22920.1	15703063
AT5G14250.1	CDY21400	AT1G22920.1	15703063
AT5G14250.1	CDY25761	AT1G22920.1	15703063
AT5G14250.1	CDX71478	AT2G26990.1	12615944
AT5G14250.1	CDX83249	AT2G26990.1	12615944
AT5G14250.1	CDY04472	AT2G26990.1	12615944
AT5G14250.1	CDY38538	AT2G26990.1	12615944
AT5G14250.1	CDX71478	AT2G26990.1	15703063
AT5G14250.1	CDX83249	AT2G26990.1	15703063
AT5G14250.1	CDY04472	AT2G26990.1	15703063
AT5G14250.1	CDY38538	AT2G26990.1	15703063
AT5G14250.1	CDY23617	AT3G13550.1	11877375
AT5G14250.1	CDY59253	AT3G13550.1	11877375
AT5G14250.1	CDX67853	AT3G61140.1	12615944
AT5G14250.1	CDY45683	AT3G61140.1	12615944
AT5G14250.1	CDY52333	AT3G61140.1	12615944
AT5G14250.1	CDY65304	AT3G61140.1	12615944
AT5G14250.1	CDX67853	AT3G61140.1	15703063
AT5G14250.1	CDY45683	AT3G61140.1	15703063
AT5G14250.1	CDY52333	AT3G61140.1	15703063
AT5G14250.1	CDY65304	AT3G61140.1	15703063
AT5G14250.1	CDY01192	AT4G14110.1	11742986
AT5G14250.1	CDY12369	AT4G14110.1	11742986
AT5G14250.1	CDY12734	AT4G14110.1	11742986
AT5G14250.1	CDY27125	AT4G14110.1	11742986
AT5G14250.1	CDY01192	AT4G14110.1	12615944
AT5G14250.1	CDY12369	AT4G14110.1	12615944
AT5G14250.1	CDY12734	AT4G14110.1	12615944
AT5G14250.1	CDY27125	AT4G14110.1	12615944
AT5G14250.1	CDY01192	AT4G14110.1	15703063
AT5G14250.1	CDY12369	AT4G14110.1	15703063
AT5G14250.1	CDY12734	AT4G14110.1	15703063
AT5G14250.1	CDY27125	AT4G14110.1	15703063
AT5G14250.1	CDX70553	AT5G14250.1	12615944
AT5G14250.1	CDX78568	AT5G14250.1	12615944
AT5G14250.1	CDX78656	AT5G14250.1	12615944
AT5G14250.1	CDX85608	AT5G14250.1	12615944
AT5G14250.1	CDX91076	AT5G14250.1	12615944
AT5G14250.1	CDY26433	AT5G14250.1	12615944
AT5G14250.1	CDX71533	AT5G42970.1	11742986
AT5G14250.1	CDY02426	AT5G42970.1	11742986
AT5G14250.1	CDY22374	AT5G42970.1	11742986
AT5G14250.1	CDY61016	AT5G42970.1	11742986
AT5G14250.1	CDX71533	AT5G42970.1	12615944
AT5G14250.1	CDY02426	AT5G42970.1	12615944
AT5G14250.1	CDY22374	AT5G42970.1	12615944
AT5G14250.1	CDY61016	AT5G42970.1	12615944
AT5G14250.1	CDX71533	AT5G42970.1	15703063
AT5G14250.1	CDY02426	AT5G42970.1	15703063
AT5G14250.1	CDY22374	AT5G42970.1	15703063
AT5G14250.1	CDY61016	AT5G42970.1	15703063
AT5G14250.1	CDX77644	AT5G46210.1	16844902
AT5G14250.1	CDX87735	AT5G46210.1	16844902
AT5G14250.1	CDY03235	AT5G46210.1	16844902
AT5G14250.1	CDY33461	AT5G46210.1	16844902
AT5G14250.1	CDY35152	AT5G46210.1	16844902
AT5G14250.1	CDY43957	AT5G46210.1	16844902
AT5G14250.1	CDY32798	AT5G56280.1	11701877
AT5G14250.1	CDY49389	AT5G56280.1	11701877
AT5G14250.1	CDY32798	AT5G56280.1	12615944
AT5G14250.1	CDY49389	AT5G56280.1	12615944
AT5G14250.1	CDY32798	AT5G56280.1	15703063
AT5G14250.1	CDY49389	AT5G56280.1	15703063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006326.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	93.63	94.0
CDX78568	Canola	cytosol	75.3	44.89
CDX85608	Canola	cytosol	69.72	41.18
Zm00001d028517_P001	Maize	cytosol	17.93	40.91
CDX91076	Canola	cytosol	68.92	40.61
AT5G14250.1	Thale cress	cytosol	68.92	40.33
CDX70553	Canola	mitochondrion	56.57	38.9
KRH57651	Soybean	cytosol	55.78	33.1
KRG94317	Soybean	cytosol	53.78	31.91
VIT_14s0171g00270.t01	Wine grape	cytosol	52.59	31.13
PGSC0003DMT400052100	Potato	cytosol	52.59	30.84
Solyc02g093920.2.1	Tomato	cytosol	52.19	30.61
CDY26433	Canola	mitochondrion	51.39	29.32
GSMUA_Achr11P...	Banana	cytosol	48.61	28.91
Os08t0119000-01	Rice	cytosol	48.61	28.64
EES13281	Sorghum	cytosol	48.21	28.21
GSMUA_AchrUn_...	Banana	cytosol	44.22	27.07
Zm00001d049652_P001	Maize	cytosol	44.22	26.12
Zm00001d035130_P001	Maize	cytosol	47.41	25.54
TraesCS7B01G216600.2	Wheat	cytosol	42.63	25.06
TraesCS7D01G312600.2	Wheat	cytosol	42.63	25.06
TraesCS7A01G315600.1	Wheat	cytosol	41.83	24.71
HORVU7Hr1G075150.4	Barley	mitochondrion	42.23	21.77

Protein Annotations

EnsemblPlants:CDX78656	EnsemblPlantsGene:GSBRNA2T00130076001	Gene3D:1.25.40.570	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008180	InterPro:CSN3	InterPro:IPR000717	InterPro:PCI_dom	InterPro:WH_DNA-bd_sf
PANTHER:PTHR10758	PANTHER:PTHR10758:SF1	PFAM:PF01399	ProteinID:CDX78656	ProteinID:CDX78656.1	SMART:SM00088
SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0004EEF943	MapMan:19.2.3.3.1.3	:	:

Description

BnaA03g05680D

Coordinates

chrLK031815:-:1690570..1692701

Molecular Weight (calculated)

28347.4 Da

IEP (calculated)

7.369

GRAVY (calculated)

-0.186

Length

251 amino acids

Sequence
(BLAST)

001: MHDATLLSPL LPHRLTPVGL LFCVVPRLLS LLQCMLSTPY LSRRTKTSIL HEPDPWDVFA NFTISLPKCA STTTKSSFKT WCTPYIDVGM RYNDGKISEL
101: EAVVLANSSE FEKDNNLGLV KQAVSSLYKR NIRRLTQKYL TLSLQDIANM VQLGGNACAP DRTIQDGQIH ALINQKVGMV RFLEDPEQYK TSEMIEIMDS
201: VIQRTIGLSK NLIAMDESLS CDPLYLGKVG KERQRYDFGD DFDTVPQKFS M

Best Arabidopsis Sequence Match ( AT5G14250.1 )
(BLAST)

001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM

Arabidopsis Description

CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.