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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 3
  • vacuole 2
  • plasma membrane 3
  • golgi 2
  • nucleus 1
  • mitochondrion 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, mitochondrion, plasma membrane, plastid
Any Predictor:mitochondrion, nucleus, plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000529.1-P
Bra002827.1-P
Bra003438.1-P
Bra006246.1-P
Bra006326.1-P
Bra007576.1-P
Bra012038.1-P
Bra012303.1-P
Bra012351.1-P
Bra017569.1-P
Bra022023.1-P
Bra023453.1-P
Bra024548.1-P
Bra025031.1-P
Bra027422.1-P
Bra032666.1-P
Bra032760.1-P
Bra033219.1-P
Bra033654.1-P
Bra035336.1-P
Bra038444.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G14250.1 Bra012303.1-P AT1G02090.1 12615944
AT5G14250.1 Bra032666.1-P AT1G02090.1 12615944
AT5G14250.1 Bra033219.1-P AT1G02090.1 12615944
AT5G14250.1 Bra012303.1-P AT1G02090.1 15703063
AT5G14250.1 Bra032666.1-P AT1G02090.1 15703063
AT5G14250.1 Bra033219.1-P AT1G02090.1 15703063
AT5G14250.1 Bra012351.1-P AT1G22920.1 11742986
AT5G14250.1 Bra024548.1-P AT1G22920.1 11742986
AT5G14250.1 Bra012351.1-P AT1G22920.1 15703063
AT5G14250.1 Bra024548.1-P AT1G22920.1 15703063
AT5G14250.1 Bra000529.1-P AT2G26990.1 12615944
AT5G14250.1 Bra012038.1-P AT2G26990.1 12615944
AT5G14250.1 Bra000529.1-P AT2G26990.1 15703063
AT5G14250.1 Bra012038.1-P AT2G26990.1 15703063
AT5G14250.1 Bra027422.1-P AT3G13550.1 11877375
AT5G14250.1 Bra003438.1-P AT3G61140.1 12615944
AT5G14250.1 Bra007576.1-P AT3G61140.1 12615944
AT5G14250.1 Bra003438.1-P AT3G61140.1 15703063
AT5G14250.1 Bra007576.1-P AT3G61140.1 15703063
AT5G14250.1 Bra032760.1-P AT4G14110.1 11742986
AT5G14250.1 Bra038444.1-P AT4G14110.1 11742986
AT5G14250.1 Bra032760.1-P AT4G14110.1 12615944
AT5G14250.1 Bra038444.1-P AT4G14110.1 12615944
AT5G14250.1 Bra032760.1-P AT4G14110.1 15703063
AT5G14250.1 Bra038444.1-P AT4G14110.1 15703063
AT5G14250.1 Bra006246.1-P AT5G14250.1 12615944
AT5G14250.1 Bra006326.1-P AT5G14250.1 12615944
AT5G14250.1 Bra023453.1-P AT5G14250.1 12615944
AT5G14250.1 Bra033654.1-P AT5G42970.1 11742986
AT5G14250.1 Bra035336.1-P AT5G42970.1 11742986
AT5G14250.1 Bra033654.1-P AT5G42970.1 12615944
AT5G14250.1 Bra035336.1-P AT5G42970.1 12615944
AT5G14250.1 Bra033654.1-P AT5G42970.1 15703063
AT5G14250.1 Bra035336.1-P AT5G42970.1 15703063
AT5G14250.1 Bra017569.1-P AT5G46210.1 16844902
AT5G14250.1 Bra022023.1-P AT5G46210.1 16844902
AT5G14250.1 Bra025031.1-P AT5G46210.1 16844902
AT5G14250.1 Bra002827.1-P AT5G56280.1 11701877
AT5G14250.1 Bra002827.1-P AT5G56280.1 12615944
AT5G14250.1 Bra002827.1-P AT5G56280.1 15703063
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX78656 Canola endoplasmic reticulum, mitochondrion, plasma membrane, plastid 94.0 93.63
Bra006246.1-P Field mustard cytosol 74.8 44.42
Bra023453.1-P Field mustard cytosol 69.2 40.71
AT5G14250.1 Thale cress cytosol 69.6 40.56
Zm00001d028517_P001 Maize cytosol 17.6 40.0
KRH57651 Soybean cytosol 56.8 33.57
KRG94317 Soybean cytosol 54.8 32.39
VIT_14s0171g00270.t01 Wine grape cytosol 53.2 31.37
PGSC0003DMT400052100 Potato cytosol 53.2 31.07
Solyc02g093920.2.1 Tomato cytosol 52.8 30.84
GSMUA_Achr11P... Banana cytosol 49.6 29.38
Os08t0119000-01 Rice cytosol 48.0 28.17
EES13281 Sorghum cytosol 48.0 27.97
GSMUA_AchrUn_... Banana cytosol 44.8 27.32
Zm00001d049652_P001 Maize cytosol 44.0 25.88
Zm00001d035130_P001 Maize cytosol 47.2 25.32
TraesCS7B01G216600.2 Wheat cytosol 42.4 24.82
TraesCS7D01G312600.2 Wheat cytosol 42.4 24.82
TraesCS7A01G315600.1 Wheat cytosol 41.6 24.47
HORVU7Hr1G075150.4 Barley mitochondrion 42.0 21.56
Protein Annotations
EnsemblPlants:Bra006326.1EnsemblPlants:Bra006326.1-PEnsemblPlantsGene:Bra006326Gene3D:1.25.40.570GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0008180InterPro:CSN3InterPro:IPR000717InterPro:PCI_dom
InterPro:WH_DNA-bd_sfPANTHER:PTHR10758PANTHER:PTHR10758:SF1PFAM:PF01399SMART:SM00088SMART:SM00753
SUPFAM:SSF46785UniParc:UPI000253F585UniProt:M4CQ37MapMan:19.2.3.3.1.3::
Description
AT5G14250 (E=3e-081) COP13, CSN3, FUS11 | COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13); protein binding
Coordinates
chrA03:-:3023804..3025798
Molecular Weight (calculated)
28206.2 Da
IEP (calculated)
7.369
GRAVY (calculated)
-0.211
Length
250 amino acids
Sequence
(BLAST)
001: MHDATLLSPL LPHRLTPVGL LFCVVPRLSL LQCMLSTPYL SRRTKTSILH EPDPWDVFAN FTISLPKCAS TTTKSSFKTW CTPYIDVGMR YNDGKISELE
101: AVVLANSSEF EKDNNLGLVK QAVSSLYKRN IRRLTQKYLT LSLQDIANMA QLGGNACAPD RTIQDGQIHA LINQKVGMVR FLEDPEQYKT SEMIEIMDSV
201: IQRTIGLSKN LIAMDESLSC DPLYLGKVGK ERQRYDFGDD FDTVPQKFSM
Best Arabidopsis Sequence Match ( AT5G14250.1 )
(BLAST)
001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
Arabidopsis Description
CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.