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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000529.1-P
Bra003438.1-P
Bra006246.1-P
Bra006326.1-P
Bra007220.1-P
Bra007576.1-P
Bra012038.1-P
Bra012303.1-P
Bra012351.1-P
Bra022520.1-P
Bra023453.1-P
Bra024548.1-P
Bra032666.1-P
Bra032760.1-P
Bra033219.1-P
Bra033654.1-P
Bra035336.1-P
Bra038444.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G61140.1 Bra012303.1-P AT1G02090.1 10330469
AT3G61140.1 Bra032666.1-P AT1G02090.1 10330469
AT3G61140.1 Bra033219.1-P AT1G02090.1 10330469
AT3G61140.1 Bra012303.1-P AT1G02090.1 11742986
AT3G61140.1 Bra032666.1-P AT1G02090.1 11742986
AT3G61140.1 Bra033219.1-P AT1G02090.1 11742986
AT3G61140.1 Bra012303.1-P AT1G02090.1 11854419
AT3G61140.1 Bra032666.1-P AT1G02090.1 11854419
AT3G61140.1 Bra033219.1-P AT1G02090.1 11854419
AT3G61140.1 Bra012303.1-P AT1G02090.1 12615944
AT3G61140.1 Bra032666.1-P AT1G02090.1 12615944
AT3G61140.1 Bra033219.1-P AT1G02090.1 12615944
AT3G61140.1 Bra012351.1-P AT1G22920.1 12615944
AT3G61140.1 Bra024548.1-P AT1G22920.1 12615944
AT3G61140.1 Bra012351.1-P AT1G22920.1 9811788
AT3G61140.1 Bra024548.1-P AT1G22920.1 9811788
AT3G61140.1 Bra000529.1-P AT2G26990.1 11854419
AT3G61140.1 Bra012038.1-P AT2G26990.1 11854419
AT3G61140.1 Bra000529.1-P AT2G26990.1 12615944
AT3G61140.1 Bra012038.1-P AT2G26990.1 12615944
AT3G61140.1 Bra007220.1-P AT3G56150.1 11029466
AT3G61140.1 Bra022520.1-P AT3G56150.1 11029466
AT3G61140.1 Bra003438.1-P AT3G61140.1 12615944
AT3G61140.1 Bra007576.1-P AT3G61140.1 12615944
AT3G61140.1 Bra032760.1-P AT4G14110.1 11701877
AT3G61140.1 Bra038444.1-P AT4G14110.1 11701877
AT3G61140.1 Bra032760.1-P AT4G14110.1 12615944
AT3G61140.1 Bra038444.1-P AT4G14110.1 12615944
AT3G61140.1 Bra032760.1-P AT4G14110.1 9811788
AT3G61140.1 Bra038444.1-P AT4G14110.1 9811788
AT3G61140.1 Bra006246.1-P AT5G14250.1 12615944
AT3G61140.1 Bra006326.1-P AT5G14250.1 12615944
AT3G61140.1 Bra023453.1-P AT5G14250.1 12615944
AT3G61140.1 Bra033654.1-P AT5G42970.1 11854419
AT3G61140.1 Bra035336.1-P AT5G42970.1 11854419
AT3G61140.1 Bra033654.1-P AT5G42970.1 12615944
AT3G61140.1 Bra035336.1-P AT5G42970.1 12615944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX67853 Canola cytosol 99.34 99.34
Bra007576.1-P Field mustard cytosol 88.52 91.97
AT3G61140.1 Thale cress cytosol 87.64 90.02
Solyc01g091650.2.1 Tomato cytosol 76.6 78.86
PGSC0003DMT400071374 Potato cytosol 76.16 78.41
VIT_15s0048g01980.t01 Wine grape cytosol 75.28 77.32
KRH65148 Soybean cytosol 74.17 75.68
KRH48239 Soybean cytosol 74.17 75.34
HORVU0Hr1G029090.1 Barley endoplasmic reticulum 17.44 70.54
Os03t0116500-01 Rice cytosol 67.33 69.16
GSMUA_Achr11P... Banana cytosol 67.11 67.26
TraesCS1D01G187600.1 Wheat cytosol 56.73 67.1
EER92981 Sorghum cytosol 65.56 67.04
GSMUA_Achr8P11930_001 Banana cytosol 66.45 66.3
TraesCS4D01G350200.1 Wheat cytosol, golgi 65.12 66.14
Zm00001d027359_P001 Maize cytosol, extracellular 64.9 66.07
TraesCS4B01G356500.1 Wheat cytosol 64.9 65.77
TraesCS5A01G525900.1 Wheat cytosol, unclear 64.68 65.7
GSMUA_Achr11P... Banana cytosol 65.12 65.56
TraesCS1A01G188800.1 Wheat cytosol 60.93 63.3
TraesCS1B01G196500.2 Wheat cytosol 61.37 61.92
HORVU1Hr1G048620.1 Barley plastid 62.03 57.7
HORVU6Hr1G027500.11 Barley plastid 34.22 54.58
HORVU4Hr1G086160.1 Barley cytosol 62.69 51.64
Zm00001d048502_P002 Maize cytosol 19.21 50.88
TraesCS5D01G238500.1 Wheat cytosol 33.11 45.05
TraesCS7B01G257700.1 Wheat plastid 38.85 25.77
Bra013838.1-P Field mustard cytosol 16.78 19.64
Bra023038.1-P Field mustard nucleus 4.19 18.27
Protein Annotations
Gene3D:1.25.40.570MapMan:19.2.3.3.1.1EnsemblPlantsGene:Bra003438EnsemblPlants:Bra003438.1EnsemblPlants:Bra003438.1-PInterPro:CSN1
ncoils:CoilGO:GO:0000338GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0008180GO:GO:0009987GO:GO:0019538
InterPro:IPR000717UniProt:M4CGV5InterPro:PCI_domPFAM:PF01399PFAM:PF10602PFscan:PS50250
PANTHER:PTHR14145PANTHER:PTHR14145:SF2InterPro:Rpn7/CSN1SMART:SM00088SMART:SM00753SUPFAM:SSF46785
UniParc:UPI00025417FEInterPro:WH_DNA-bd_sfSEG:seg:::
Description
AT3G61140 (E=1e-142) FUS6, ATFUS6, CSN1, COP11, EMB78, ATSK31, SK31 | FUS6 (FUSCA 6)
Coordinates
chrA07:+:13177829..13180587
Molecular Weight (calculated)
51920.2 Da
IEP (calculated)
7.050
GRAVY (calculated)
-0.400
Length
453 amino acids
Sequence
(BLAST)
001: MERDEEASEP MMEMCTNGGG EETSNRRPII SGEPLDIEAY ATLYKGRTKI MRLLFIASHC GGNQTMQLEA LRMAYDEIKK GENTQLFRDV VNRINGRLGD
101: KYNMDSAWCE SVDRRAEQKK GRLENELSSY RTNLIKESIR MGHNDFGDFY YACGLLNEAF KNYVRTRDYC TTAKHIIHMC MNAILVSIEM GQFTHVSSYV
201: NKAEQNHETL DPIVAAKLRC ASGLAHLELK KYKLAARKFL DVSPELGNSY NEVIAPQDVA TYGGLCALAS FDRSELKAFI PLRFFSLVAK VIDNINFRDF
301: LELVPEVREL INDFYSSRYA SCLEYLGSLR ANLLLDIHLH DHVDTLYDQI RKKALIQYTL PFVSVDLSRM ADAFKTSVSG LEKELEALIT DNQIQARIDS
401: HNKILYARHA DQRNATFQKV LQMGNEFDRD VRSMMLRANL LKHEYHARAG RNH
Best Arabidopsis Sequence Match ( AT3G61140.1 )
(BLAST)
001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
Arabidopsis Description
CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.