Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P11930_001 | Banana | cytosol | 84.51 | 84.14 |
| GSMUA_Achr11P... | Banana | cytosol | 83.41 | 83.78 |
| HORVU0Hr1G029090.1 | Barley | endoplasmic reticulum | 18.58 | 75.0 |
| VIT_15s0048g01980.t01 | Wine grape | cytosol | 72.79 | 74.6 |
| TraesCS1D01G187600.1 | Wheat | cytosol | 63.05 | 74.41 |
| KRH48239 | Soybean | cytosol | 72.79 | 73.77 |
| Os03t0116500-01 | Rice | cytosol | 71.9 | 73.7 |
| KRH65148 | Soybean | cytosol | 71.68 | 72.97 |
| Solyc01g091650.2.1 | Tomato | cytosol | 71.02 | 72.95 |
| PGSC0003DMT400071374 | Potato | cytosol | 71.02 | 72.95 |
| EER92981 | Sorghum | cytosol | 71.02 | 72.46 |
| Zm00001d027359_P001 | Maize | cytosol, extracellular | 70.58 | 71.69 |
| TraesCS1A01G188800.1 | Wheat | cytosol | 68.36 | 70.87 |
| TraesCS4D01G350200.1 | Wheat | cytosol, golgi | 69.25 | 70.18 |
| TraesCS4B01G356500.1 | Wheat | cytosol | 69.03 | 69.8 |
| TraesCS1B01G196500.2 | Wheat | cytosol | 69.25 | 69.71 |
| TraesCS5A01G525900.1 | Wheat | cytosol, unclear | 68.58 | 69.51 |
| AT3G61140.1 | Thale cress | cytosol | 67.48 | 69.16 |
| CDY52333 | Canola | cytosol | 66.59 | 67.79 |
| Bra007576.1-P | Field mustard | cytosol | 65.27 | 67.66 |
| CDY45683 | Canola | cytosol | 67.48 | 67.33 |
| CDX67853 | Canola | cytosol | 67.26 | 67.11 |
| Bra003438.1-P | Field mustard | cytosol | 67.26 | 67.11 |
| CDY65304 | Canola | cytosol | 65.71 | 67.04 |
| HORVU1Hr1G048620.1 | Barley | plastid | 68.58 | 63.66 |
| HORVU6Hr1G027500.11 | Barley | plastid | 37.61 | 59.86 |
| Zm00001d048502_P002 | Maize | cytosol | 22.12 | 58.48 |
| HORVU4Hr1G086160.1 | Barley | cytosol | 69.03 | 56.73 |
| TraesCS5D01G238500.1 | Wheat | cytosol | 35.18 | 47.75 |
| TraesCS7B01G257700.1 | Wheat | plastid | 40.71 | 26.94 |
| GSMUA_Achr8P16370_001 | Banana | cytosol | 18.14 | 21.24 |
| GSMUA_Achr6P12080_001 | Banana | cytosol | 18.14 | 21.24 |
| GSMUA_Achr10P... | Banana | cytosol | 17.26 | 20.21 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.1 | InterPro:CSN1 | ncoils:Coil | GO:GO:0000338 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008180 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr11G17420_001 | EnsemblPlants:GSMUA_Achr11P17420_001 | EnsemblPlants:GSMUA_Achr11T17420_001 |
| InterPro:IPR000717 | UniProt:M0RT22 | InterPro:PCI_dom | PFAM:PF01399 | PFAM:PF10602 | PFscan:PS50250 |
| PANTHER:PTHR14145 | PANTHER:PTHR14145:SF2 | InterPro:Rpn7/CSN1 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 |
| UniParc:UPI0002965BA4 | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
COP9 signalosome complex subunit 1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G17420_001]
Coordinates
chr11:+:19001364..19006835
Molecular Weight (calculated)
50959.0 Da
IEP (calculated)
6.515
GRAVY (calculated)
-0.354
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGDEGVVV APMGDESMCS NGGAVDDPRR PPASSGKAAA GGGEQMDLEA YVALYTGRTR VSRLLFIAER CGNEGMQLEA LRMAHDEIKK GEDSHLYREV
101: IAKIGGRLGP LYALDQTWVD MVDRRAEARK EKLENELNSY KTNLIKESIR MGFNDLADFF YAHGQLGDAF KNYVRTRDYC TSSKHISQMC LNVILVSIEL
201: GQFMHVSNYV SKAEQAPEQV DPITHSKLRC AAGLAYMETK KYKLAARKFL ETGPELGSNY TDVIAQQDVA TYGGLCALAS FDRTELKNKV IDNINFRNFL
301: ELVPEVRELI NDFYASRYAS CLEYLENLKP NLLLDIHLHD HVETLYTDIR HKAIIQYTHP FISVDLHTMA GAFKTSVAGL EKELEALITD DKIQARIDSH
401: NKILYARHAD QRNATFQRVL QTGVEFERDV RSMLMRANLI KQESILRAAR KL
101: IAKIGGRLGP LYALDQTWVD MVDRRAEARK EKLENELNSY KTNLIKESIR MGFNDLADFF YAHGQLGDAF KNYVRTRDYC TSSKHISQMC LNVILVSIEL
201: GQFMHVSNYV SKAEQAPEQV DPITHSKLRC AAGLAYMETK KYKLAARKFL ETGPELGSNY TDVIAQQDVA TYGGLCALAS FDRTELKNKV IDNINFRNFL
301: ELVPEVRELI NDFYASRYAS CLEYLENLKP NLLLDIHLHD HVETLYTDIR HKAIIQYTHP FISVDLHTMA GAFKTSVAGL EKELEALITD DKIQARIDSH
401: NKILYARHAD QRNATFQRVL QTGVEFERDV RSMLMRANLI KQESILRAAR KL
001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
Arabidopsis Description
CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.