Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020231_P001 | Maize | cytosol | 22.01 | 83.82 |
| GSMUA_Achr2P12070_001 | Banana | cytosol | 83.4 | 82.76 |
| Zm00001d023916_P001 | Maize | cytosol | 14.67 | 80.85 |
| Zm00001d006410_P013 | Maize | nucleus | 72.97 | 72.41 |
| KXG36255 | Sorghum | nucleus | 72.2 | 71.65 |
| TraesCS2B01G253600.2 | Wheat | nucleus | 72.2 | 71.65 |
| TraesCS2A01G228300.1 | Wheat | nucleus | 71.81 | 71.26 |
| TraesCS2D01G239100.1 | Wheat | golgi | 71.81 | 71.26 |
| CDX90073 | Canola | cytosol | 16.99 | 70.97 |
| VIT_15s0021g01580.t01 | Wine grape | cytosol | 70.66 | 70.66 |
| Os07t0490800-01 | Rice | cytosol, plasma membrane | 32.82 | 70.25 |
| HORVU2Hr1G050230.9 | Barley | nucleus | 70.27 | 69.73 |
| Zm00001d004607_P001 | Maize | nucleus | 44.4 | 69.7 |
| KRH13242 | Soybean | cytosol | 69.5 | 69.5 |
| KRH20583 | Soybean | cytosol | 68.73 | 68.73 |
| Solyc01g090290.2.1 | Tomato | cytosol | 67.95 | 67.95 |
| AT1G02090.1 | Thale cress | cytosol | 66.41 | 66.15 |
| Zm00001d021522_P002 | Maize | cytosol, plasma membrane | 70.27 | 65.47 |
| CDY38053 | Canola | cytosol | 65.25 | 64.5 |
| Bra032666.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 65.25 | 64.5 |
| Bra012303.1-P | Field mustard | nucleus | 63.32 | 63.08 |
| CDY00413 | Canola | cytosol | 62.93 | 62.69 |
| CDY01302 | Canola | nucleus | 62.93 | 62.69 |
| Bra033219.1-P | Field mustard | cytosol | 22.39 | 61.05 |
| PGSC0003DMT400067022 | Potato | cytosol | 66.41 | 58.11 |
| CDY15130 | Canola | extracellular | 23.94 | 55.36 |
| VIT_02s0234g00120.t01 | Wine grape | cytosol | 55.21 | 55.21 |
| KRH01071 | Soybean | nucleus | 57.14 | 52.67 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P21630_001 | EnsemblPlants:GSMUA_Achr4T21630_001 | EnsemblPlantsGene:GSMUA_Achr4G21630_001 | Gene3D:1.25.40.570 | InterPro:IPR000717 | InterPro:PCI_dom |
| PANTHER:PTHR15350 | PANTHER:PTHR15350:SF5 | PFscan:PS50250 | SEG:seg | SMART:SM00088 | SMART:SM00753 |
| UniParc:UPI000296A9BA | UniProt:M0SQX6 | MapMan:19.2.3.3.1.7 | : | : | : |
Description
COP9 signalosome complex subunit 7 [Source:GMGC_GENE;Acc:GSMUA_Achr4G21630_001]
Coordinates
chr4:-:22041510..22056911
Molecular Weight (calculated)
29752.8 Da
IEP (calculated)
5.705
GRAVY (calculated)
-0.403
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMERRQSEI IDDFVKRAAA LYDAAPNLAG LILEATAHPF LFAFSEILSV PSLARLKGTQ YSSSLDVLRL FAYGTWSDYK RNAGCLPVLL PDQVRKLKQL
101: SVLTLAEIEK VLSYDHLMEE LDVSNVRELE DFLINECMYV GIVRGKLDQS RRCFEVQFAA GRDLRPEQLD NMIQTLNNWS GTSDNLLHMI QEKIKWADTM
201: SEANKMHRKE IVDKVEEVKK SLKADLHLQG HGEIFSEPGG MMDYEEDRSR PKRRRQPMA
101: SVLTLAEIEK VLSYDHLMEE LDVSNVRELE DFLINECMYV GIVRGKLDQS RRCFEVQFAA GRDLRPEQLD NMIQTLNNWS GTSDNLLHMI QEKIKWADTM
201: SEANKMHRKE IVDKVEEVKK SLKADLHLQG HGEIFSEPGG MMDYEEDRSR PKRRRQPMA
001: MDIEQKQAEI IDQLVKRAST CKSEALGPLI IEATSHPSLF AFSEILALPN VAQLEGTTDS VYLDLLRLFA HGTWGDYKCN ATRLPHLSPD QILKLKQLTV
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKGDVDIRG NKEMFGEPSG VMDYEEDGIR PKRRRHPVTR
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKGDVDIRG NKEMFGEPSG VMDYEEDGIR PKRRRHPVTR
Arabidopsis Description
CSN7COP9 signalosome complex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q94JU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.