Factsheet for GSMUA_Achr7P21330_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P12070_001
GSMUA_Achr3P04920_001
GSMUA_Achr4P21630_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57290.1	GSMUA_Achr2P12070_001	AT1G02090.1	11029466
AT3G57290.1	GSMUA_Achr4P21630_001	AT1G02090.1	11029466
AT3G57290.1	GSMUA_Achr3P04920_001	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029828_P001	Maize	cytosol	27.5	85.21
Zm00001d029511_P001	Maize	vacuole	34.55	83.06
KXG34696	Sorghum	cytosol	82.27	82.46
Zm00001d005238_P001	Maize	plasma membrane	80.68	81.42
Zm00001d019182_P001	Maize	cytosol	80.45	81.19
Os07t0222300-01	Rice	cytosol, plasma membrane	79.77	79.95
KRH33198	Soybean	endoplasmic reticulum	77.27	77.8
KRH72039	Soybean	endoplasmic reticulum	77.05	77.57
VIT_00s0252g00070.t01	Wine grape	cytosol	75.45	75.97
AT3G57290.1	Thale cress	cytosol	75.0	74.83
PGSC0003DMT400076704	Potato	cytosol	73.64	73.97
TraesCS5D01G269200.1	Wheat	cytosol	74.09	73.92
TraesCS5B01G260000.2	Wheat	cytosol, golgi, unclear	74.09	73.92
TraesCS5A01G261900.1	Wheat	cytosol	74.09	73.92
Solyc10g079880.1.1	Tomato	cytosol, nucleus	72.95	73.29
Bra007317.1-P	Field mustard	cytosol	73.41	73.24
CDY06117	Canola	cytosol	73.41	73.24
CDX88939	Canola	cytosol	73.41	73.24
Bra014633.1-P	Field mustard	cytosol	73.18	73.02
CDY30993	Canola	cytosol	73.18	73.02
CDY19244	Canola	extracellular	7.27	72.73
CDX72053	Canola	cytosol	72.73	72.56
Zm00001d040830_P001	Maize	cytosol	32.95	70.39
Os07t0167000-01	Rice	cytosol	64.77	68.67
HORVU5Hr1G072560.1	Barley	cytosol	73.18	68.51
Zm00001d020479_P005	Maize	cytosol	21.59	66.9
Os07t0503700-00	Rice	cytosol, plasma membrane	62.73	64.04
Zm00001d010441_P001	Maize	cytosol	14.09	59.05
Zm00001d029554_P001	Maize	plasma membrane, plastid	35.23	58.05
Zm00001d014873_P001	Maize	plasma membrane, plastid	34.77	57.3
Zm00001d051103_P004	Maize	plasma membrane	26.59	55.45
Zm00001d020635_P001	Maize	mitochondrion	27.95	53.48
Bra034326.1-P	Field mustard	cytosol	25.23	48.26
Zm00001d051050_P001	Maize	plasma membrane	38.41	45.92
CDY70248	Canola	cytosol	27.5	40.88
Zm00001d020588_P001	Maize	plasma membrane	16.14	39.44
Zm00001d031414_P001	Maize	cytosol	15.68	38.98
CDY70454	Canola	mitochondrion	8.86	36.45
CDX79391	Canola	cytosol, extracellular, nucleus	10.45	20.72
CDY19243	Canola	cytosol	6.59	16.57

Protein Annotations

MapMan:17.4.1.3.5	ncoils:Coil	GO:GO:0000003	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003743	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0005852	GO:GO:0005886	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446
GO:GO:0006950	GO:GO:0007275	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009640	GO:GO:0009651	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0016282	GO:GO:0017148	GO:GO:0019538	GO:GO:0030371
GO:GO:0031597	GO:GO:0033290	GO:GO:0045182	GO:GO:0071540	EnsemblPlantsGene:GSMUA_Achr7G21330_001	EnsemblPlants:GSMUA_Achr7P21330_001
EnsemblPlants:GSMUA_Achr7T21330_001	InterPro:IPR000717	InterPro:IPR011990	UniProt:M0TJH0	HAMAP:MF_03004	InterPro:PCI_dom
PFAM:PF01399	PFAM:PF09440	PIRSF:PIRSF016255	PFscan:PS50250	PANTHER:PTHR10317	PANTHER:PTHR10317:SF0
SMART:SM00088	SMART:SM00753	SMART:SM01186	SUPFAM:SSF46785	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000296719B	InterPro:WH_DNA-bd_sf	InterPro:eIF3e	InterPro:eIF3e_N	:	:

Description

Eukaryotic translation initiation factor 3 subunit E [Source:GMGC_GENE;Acc:GSMUA_Achr7G21330_001]

Coordinates

chr7:+:24112000..24117415

Molecular Weight (calculated)

51390.0 Da

IEP (calculated)

5.771

GRAVY (calculated)

-0.215

Length

440 amino acids

Sequence
(BLAST)

001: MADYDLTSRI APHLDRHLVF PLLEFLQERE LYADDEILKA KIQLLSQTNM VDYAMDIHKA LYHTEDVPQE MVGRRVEVVA RLKSLEELAA PLISFLQNAS
101: LVQELRPDKQ YNIQMLHDRF QIGADQIEAL YQYAKFQFEC GNYSGAADYL YQYRALCTNS ERSLSALWGK LAAEILMQNW DTALEELNRL KEIIDSKSFA
201: SPLNQLQNRI WLMHWSLFIF FNHENGRNGI IDLFFQDRYL NAIQTNAHHL LRYVATAVIV NKRRRNMLKE LVKVIQQELH SYKDPITEFL ECLYVNYDFD
301: GAQTKLKECE QVILNDPFLG KRIEDSNFTT VPLREEFLEN ARLFVFETYC RIHRCIDISV LAEKLNLNMS YDEALVWITN LIRNSKLEAK IDAVLGTVTM
401: PIVHQNVHEQ IIEAMKNLNM RTYLLAKNIV EPAQAAQATR

Best Arabidopsis Sequence Match ( AT3G57290.1 )
(BLAST)

001: MEESKQNYDL TPLIAPNLDR HLVFPIFEFL QERQLYPDEQ ILKSKIQLLN QTNMVDYAMD IHKSLYHTED APQEMVERRT EVVARLKSLE EAAAPLVSFL
101: LNPNAVQELR ADKQYNLQML KERYQIGPDQ IEALYQYAKF QFECGNYSGA ADYLYQYRTL CSNLERSLSA LWGKLASEIL MQNWDIALEE LNRLKEIIDS
201: KSFSSPLNQV QNRIWLMHWG LYIFFNHDNG RTQIIDLFNQ DKYLNAIQTS APHLLRYLAT AFIVNKRRRP QLKEFIKVIQ QEHYSYKDPI IEFLACVFVN
301: YDFDGAQKKM KECEEVIVND PFLGKRVEDG NFSTVPLRDE FLENARLFVF ETYCKIHQRI DMGVLAEKLN LNYEEAERWI VNLIRTSKLD AKIDSESGTV
401: IMEPTQPNVH EQLINHTKGL SGRTYKLVNQ LLEHTQAQAT R

Arabidopsis Description

TIF3E1Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:A0A178VL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.