Factsheet for HORVU5Hr1G072560.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G050230.9
HORVU2Hr1G058370.1
HORVU2Hr1G058390.1
HORVU5Hr1G063770.2
HORVU5Hr1G098600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57290.1	HORVU2Hr1G050230.9	AT1G02090.1	11029466
AT3G57290.1	HORVU2Hr1G058370.1	AT3G56150.1	11029466
AT3G57290.1	HORVU2Hr1G058390.1	AT3G56150.1	11029466
AT3G57290.1	HORVU5Hr1G063770.2	AT3G56150.1	11029466
AT3G57290.1	HORVU5Hr1G098600.1	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G269200.1	Wheat	cytosol	92.98	99.09
TraesCS5B01G260000.2	Wheat	cytosol, golgi, unclear	92.98	99.09
TraesCS5A01G261900.1	Wheat	cytosol	92.77	98.87
KXG34696	Sorghum	cytosol	75.96	81.32
Zm00001d019182_P001	Maize	cytosol	75.11	80.96
Os07t0222300-01	Rice	cytosol, plasma membrane	75.11	80.41
Zm00001d005238_P001	Maize	plasma membrane	74.26	80.05
Zm00001d029828_P001	Maize	cytosol	24.04	79.58
Zm00001d029511_P001	Maize	vacuole	28.94	74.32
GSMUA_Achr7P21330_001	Banana	cytosol	68.51	73.18
KRH33198	Soybean	endoplasmic reticulum	65.74	70.71
KRH72039	Soybean	endoplasmic reticulum	65.74	70.71
Os07t0167000-01	Rice	cytosol	61.7	69.88
VIT_00s0252g00070.t01	Wine grape	cytosol	64.47	69.34
CDY19244	Canola	extracellular	6.38	68.18
AT3G57290.1	Thale cress	cytosol	63.4	67.57
Zm00001d040830_P001	Maize	cytosol	29.57	67.48
Bra007317.1-P	Field mustard	cytosol	62.98	67.12
CDY06117	Canola	cytosol	62.98	67.12
Solyc10g079880.1.1	Tomato	cytosol, nucleus	62.34	66.89
CDX88939	Canola	cytosol	62.77	66.89
CDX72053	Canola	cytosol	62.55	66.67
CDY30993	Canola	cytosol	62.55	66.67
Bra014633.1-P	Field mustard	cytosol	62.55	66.67
PGSC0003DMT400076704	Potato	cytosol	61.91	66.44
Zm00001d020479_P005	Maize	cytosol	20.0	66.2
Os07t0503700-00	Rice	cytosol, plasma membrane	60.21	65.66
Zm00001d029554_P001	Maize	plasma membrane, plastid	30.0	52.81
Zm00001d014873_P001	Maize	plasma membrane, plastid	29.57	52.06
Zm00001d051103_P004	Maize	plasma membrane	22.34	49.76
Zm00001d020635_P001	Maize	mitochondrion	24.26	49.57
Bra034326.1-P	Field mustard	cytosol	21.7	44.35
Zm00001d051050_P001	Maize	plasma membrane	32.34	41.3
CDY70248	Canola	cytosol	23.83	37.84
Zm00001d031414_P001	Maize	cytosol	14.04	37.29
CDY70454	Canola	mitochondrion	7.66	33.64
CDX79391	Canola	cytosol, extracellular, nucleus	9.15	19.37
CDY19243	Canola	cytosol	5.53	14.86

Protein Annotations

Gene3D:1.25.40.570	MapMan:17.4.1.3.5	UniProt:A0A287RRS8	ncoils:Coil	GO:GO:0000003	GO:GO:0001732
GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003743
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0005852	GO:GO:0005886	GO:GO:0006412	GO:GO:0006413	GO:GO:0006950
GO:GO:0007275	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009640	GO:GO:0009651	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0030371	GO:GO:0031597	GO:GO:0033290
GO:GO:0045182	GO:GO:0071540	EnsemblPlantsGene:HORVU5Hr1G072560	EnsemblPlants:HORVU5Hr1G072560.1	InterPro:IPR000717	HAMAP:MF_03004
InterPro:PCI_dom	PFAM:PF01399	PFAM:PF09440	PIRSF:PIRSF016255	PFscan:PS50250	PANTHER:PTHR10317
PANTHER:PTHR10317:SF0	SMART:SM00088	SMART:SM00753	SMART:SM01186	SUPFAM:SSF46785	UniParc:UPI000B484632
InterPro:WH_DNA-bd_sf	InterPro:eIF3e	InterPro:eIF3e_N	SEG:seg	:	:

Description

Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:A0A287RRS8]

Coordinates

chrchr5H:-:535815189..535817106

Molecular Weight (calculated)

53897.0 Da

IEP (calculated)

5.576

GRAVY (calculated)

-0.217

Length

470 amino acids

Sequence
(BLAST)

001: MPPPVQYPLL SLHPPPPPTN PSIPSPETAM AEHDLTASVA AWMDPHLVLP VLEFLQERGV YADEEILRGK IRLLGGTNMV DYAMDIHKSL HGTDEVPADM
101: VARRSEVVER LRALQEAVAP IVAFLSSPQL VQELHADKQY NLHMLQERHH IGPDQIEALY QYAKFQYECG MYSDAADFLS QYRALCTNSE RSLSALWGKL
201: AAEILMQNWD VAQEELNRLK EMIDSSSFTS SPVNQLHSRI WLMHWSLFIF FNHENGRNGI IDLFFQDRYL NAIQTNAPHL LRYLAAAVVV NKRRRNMLKE
301: LIKVIQQEQN IYKDPIIEFL ECLYVKYDFD GAQQKLVECE QVILNDPFLG KRVEERNGIA VPLRDEFLEN ARLFIFETYC RIHRCIDIGV LAEKMNMTYD
401: EAELWIMNMV KSSKLDAKID SVTGTLIMTT NRVDVHEQII ESMKNLNART YMLAKSVVDP GHAAAQQAAR

Best Arabidopsis Sequence Match ( AT3G57290.1 )
(BLAST)

001: MEESKQNYDL TPLIAPNLDR HLVFPIFEFL QERQLYPDEQ ILKSKIQLLN QTNMVDYAMD IHKSLYHTED APQEMVERRT EVVARLKSLE EAAAPLVSFL
101: LNPNAVQELR ADKQYNLQML KERYQIGPDQ IEALYQYAKF QFECGNYSGA ADYLYQYRTL CSNLERSLSA LWGKLASEIL MQNWDIALEE LNRLKEIIDS
201: KSFSSPLNQV QNRIWLMHWG LYIFFNHDNG RTQIIDLFNQ DKYLNAIQTS APHLLRYLAT AFIVNKRRRP QLKEFIKVIQ QEHYSYKDPI IEFLACVFVN
301: YDFDGAQKKM KECEEVIVND PFLGKRVEDG NFSTVPLRDE FLENARLFVF ETYCKIHQRI DMGVLAEKLN LNYEEAERWI VNLIRTSKLD AKIDSESGTV
401: IMEPTQPNVH EQLINHTKGL SGRTYKLVNQ LLEHTQAQAT R

Arabidopsis Description

TIF3E1Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:A0A178VL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.