Factsheet for Solyc10g079880.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g090290.2.1
Solyc01g102560.2.1
Solyc01g102570.2.1
Solyc01g102590.2.1
Solyc01g102600.2.1
Solyc06g076150.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57290.1	Solyc01g090290.2.1	AT1G02090.1	11029466
AT3G57290.1	Solyc01g102560.2.1	AT3G56150.1	11029466
AT3G57290.1	Solyc01g102570.2.1	AT3G56150.1	11029466
AT3G57290.1	Solyc01g102590.2.1	AT3G56150.1	11029466
AT3G57290.1	Solyc01g102600.2.1	AT3G56150.1	11029466
AT3G57290.1	Solyc06g076150.2.1	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076704	Potato	cytosol	98.86	98.86
Bra007317.1-P	Field mustard	cytosol	83.56	82.99
CDY06117	Canola	cytosol	83.56	82.99
CDX88939	Canola	cytosol	83.11	82.54
Bra014633.1-P	Field mustard	cytosol	82.88	82.31
AT3G57290.1	Thale cress	cytosol	82.88	82.31
CDX72053	Canola	cytosol	82.65	82.09
CDY30993	Canola	cytosol	82.42	81.86
Zm00001d029511_P001	Maize	vacuole	31.96	76.5
GSMUA_Achr7P21330_001	Banana	cytosol	73.29	72.95
Zm00001d005238_P001	Maize	plasma membrane	71.69	72.02
KXG34696	Sorghum	cytosol	72.15	71.98
Zm00001d029828_P001	Maize	cytosol	23.06	71.13
Zm00001d019182_P001	Maize	cytosol	70.32	70.64
Os07t0222300-01	Rice	cytosol, plasma membrane	69.18	69.02
TraesCS5B01G260000.2	Wheat	cytosol, golgi, unclear	67.81	67.35
TraesCS5D01G269200.1	Wheat	cytosol	67.81	67.35
TraesCS5A01G261900.1	Wheat	cytosol	67.81	67.35
Zm00001d040830_P001	Maize	cytosol	31.51	66.99
Os07t0167000-01	Rice	cytosol	60.5	63.86
HORVU5Hr1G072560.1	Barley	cytosol	66.89	62.34
Os07t0503700-00	Rice	cytosol, plasma membrane	57.99	58.93
Zm00001d051103_P004	Maize	plasma membrane	26.03	54.03
Zm00001d029554_P001	Maize	plasma membrane, plastid	32.88	53.93
Zm00001d020479_P005	Maize	cytosol	17.35	53.52
Zm00001d014873_P001	Maize	plasma membrane, plastid	32.42	53.18
Zm00001d020635_P001	Maize	mitochondrion	25.11	47.83
Zm00001d010441_P001	Maize	cytosol	10.96	45.71
Zm00001d051050_P001	Maize	plasma membrane	35.16	41.85
Zm00001d031414_P001	Maize	cytosol	14.61	36.16
Zm00001d020588_P001	Maize	plasma membrane	13.47	32.78

Protein Annotations

Gene3D:1.25.40.570	MapMan:17.4.1.3.5	ncoils:Coil	GO:GO:0000003	GO:GO:0001731	GO:GO:0001732
GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003743
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0005852	GO:GO:0005886	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446
GO:GO:0006950	GO:GO:0007275	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009640	GO:GO:0009651	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0016282	GO:GO:0017148	GO:GO:0019538	GO:GO:0030371
GO:GO:0031597	GO:GO:0033290	GO:GO:0045182	GO:GO:0071540	InterPro:IPR000717	UniProt:K4D2M9
HAMAP:MF_03004	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF09440	PIRSF:PIRSF016255	PFscan:PS50250
PANTHER:PTHR10317	PANTHER:PTHR10317:SF0	SMART:SM00088	SMART:SM00753	SMART:SM01186	SUPFAM:SSF46785
EnsemblPlantsGene:Solyc10g079880.1	EnsemblPlants:Solyc10g079880.1.1	UniParc:UPI000276AA1D	InterPro:WH_DNA-bd_sf	InterPro:eIF3e	InterPro:eIF3e_N
SEG:seg	:	:	:	:	:

Description

Eukaryotic translation initiation factor 3 subunit E [Source:Projected from Arabidopsis thaliana (AT3G57290) UniProtKB/Swiss-Prot;Acc:Q9C5Z3]

Coordinates

chr10:-:61348836..61352557

Molecular Weight (calculated)

51114.2 Da

IEP (calculated)

5.140

GRAVY (calculated)

-0.365

Length

438 amino acids

Sequence
(BLAST)

001: MASKYDLTPR VAQQLDIHLI FPLLEFLQEQ GLYPDEYILK AKIELLNHTN MVDYAMDIHK SLYHTDDVPQ EMMERRAEVV ARLKALEEAA APLITFLQNS
101: SAVQELRADK QHNLQLLQER YQIGPDQIEA LYQYAKFQFE CGNYSGAADY LYQYRALCTN SDRSVSALWG KLAAEILMQN WDIALEELNR LKEIIDSKSF
201: STPLNQVQNR IWLMHWSLFI FFNHDNGRTL IIDLFNQDKY LNAIQTSAPH LLRYLAIAFI VNKRRRPQFK DFIKVIQQEQ HSCKDPITEF LACIYVDYDF
301: DGAQEKMKEC EELILNDPFL GKRAEEGSFS SVPLRDEFLE NARLFISETY CRIHQRIDMG VLAEKLNLNL EEAERWMVNL IRTSKLDAKI DTETGTVTME
401: PNQPNVYEQL IDHTKPLSGR TYKLVSQLLE HAQTQLAR

Best Arabidopsis Sequence Match ( AT3G57290.1 )
(BLAST)

001: MEESKQNYDL TPLIAPNLDR HLVFPIFEFL QERQLYPDEQ ILKSKIQLLN QTNMVDYAMD IHKSLYHTED APQEMVERRT EVVARLKSLE EAAAPLVSFL
101: LNPNAVQELR ADKQYNLQML KERYQIGPDQ IEALYQYAKF QFECGNYSGA ADYLYQYRTL CSNLERSLSA LWGKLASEIL MQNWDIALEE LNRLKEIIDS
201: KSFSSPLNQV QNRIWLMHWG LYIFFNHDNG RTQIIDLFNQ DKYLNAIQTS APHLLRYLAT AFIVNKRRRP QLKEFIKVIQ QEHYSYKDPI IEFLACVFVN
301: YDFDGAQKKM KECEEVIVND PFLGKRVEDG NFSTVPLRDE FLENARLFVF ETYCKIHQRI DMGVLAEKLN LNYEEAERWI VNLIRTSKLD AKIDSESGTV
401: IMEPTQPNVH EQLINHTKGL SGRTYKLVNQ LLEHTQAQAT R

Arabidopsis Description

TIF3E1Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:A0A178VL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.