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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:secretory
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
EES13928
KXG35906
KXG36255

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G57290.1 KXG36255 AT1G02090.1 11029466
AT3G57290.1 EES13928 AT3G56150.1 11029466
AT3G57290.1 KXG35906 AT3G56150.1 11029466
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d005238_P001 Maize plasma membrane 96.13 96.79
Zm00001d019182_P001 Maize cytosol 94.76 95.41
Os07t0222300-01 Rice cytosol, plasma membrane 89.29 89.29
GSMUA_Achr7P21330_001 Banana cytosol 82.46 82.27
TraesCS5D01G269200.1 Wheat cytosol 82.0 81.63
TraesCS5B01G260000.2 Wheat cytosol, golgi, unclear 82.0 81.63
TraesCS5A01G261900.1 Wheat cytosol 82.0 81.63
KRH33198 Soybean endoplasmic reticulum 77.22 77.57
KRH72039 Soybean endoplasmic reticulum 76.77 77.12
Os07t0167000-01 Rice cytosol 71.98 76.14
HORVU5Hr1G072560.1 Barley cytosol 81.32 75.96
VIT_00s0252g00070.t01 Wine grape cytosol 74.94 75.29
AT3G57290.1 Thale cress cytosol 73.12 72.79
CDY19244 Canola extracellular 7.29 72.73
PGSC0003DMT400076704 Potato cytosol 71.98 72.15
Solyc10g079880.1.1 Tomato cytosol, nucleus 71.98 72.15
CDY06117 Canola cytosol 72.44 72.11
Bra007317.1-P Field mustard cytosol 72.21 71.88
CDX88939 Canola cytosol 72.21 71.88
CDY30993 Canola cytosol 71.98 71.66
Bra014633.1-P Field mustard cytosol 71.98 71.66
CDX72053 Canola cytosol 71.75 71.43
Os07t0503700-00 Rice cytosol, plasma membrane 66.97 68.21
Bra034326.1-P Field mustard cytosol 25.51 48.7
CDY70248 Canola cytosol 28.25 41.89
CDY70454 Canola mitochondrion 9.34 38.32
CDX79391 Canola cytosol, extracellular, nucleus 10.71 21.17
CDY19243 Canola cytosol 6.61 16.57
Protein Annotations
Gene3D:1.25.40.570MapMan:17.4.1.3.5UniProt:A0A1B6Q9V6GO:GO:0000003GO:GO:0001731GO:GO:0001732
GO:GO:0002183GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003729GO:GO:0003743
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005737GO:GO:0005829GO:GO:0005852GO:GO:0005886GO:GO:0006412GO:GO:0006413
GO:GO:0006446GO:GO:0006950GO:GO:0007275GO:GO:0008135GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009628GO:GO:0009640GO:GO:0009651GO:GO:0009791GO:GO:0009908
GO:GO:0009987GO:GO:0016020GO:GO:0016043GO:GO:0016282GO:GO:0017148GO:GO:0019538
GO:GO:0030371GO:GO:0031597GO:GO:0033290GO:GO:0045182GO:GO:0071540InterPro:IPR000717
InterPro:IPR011990EnsemblPlants:KXG34696ProteinID:KXG34696ProteinID:KXG34696.1HAMAP:MF_03004InterPro:PCI_dom
PFAM:PF01399PFAM:PF09440PIRSF:PIRSF016255PFscan:PS50250PANTHER:PTHR10317PANTHER:PTHR10317:SF0
SMART:SM00088SMART:SM00753SMART:SM01186EnsemblPlantsGene:SORBI_3002G077900SUPFAM:SSF46785SUPFAM:SSF48452
InterPro:TPR-like_helical_dom_sfUniParc:UPI0001FCCE12InterPro:WH_DNA-bd_sfInterPro:eIF3eInterPro:eIF3e_N:
Description
hypothetical protein
Coordinates
chr2:-:8122129..8125748
Molecular Weight (calculated)
51318.8 Da
IEP (calculated)
5.616
GRAVY (calculated)
-0.285
Length
439 amino acids
Sequence
(BLAST)
001: MAEHDLTALM AAQLDRHLVF PLLEFLQERQ LYSEPEILEA KIRLLSGTNM VDYAMDIHKS LHGTDDVPED MVKRRAEVVS RLRSLEEAAA PLVAFLQNPQ
101: LVQELRPDKQ YNIHMLQERY QIGPDQIEAL YQYAKFQFEC GNYSGAADYL YQYRALCTNS ERSVSALWGK LAAEILMQNW DVALEELNRL KEIIDSKNFS
201: SPLNQLQNRI WLMHWALFIF FNHENGRNGI IDLFFQDRYL NAIQTNAHHL LRYLATAVVV NKRRRNMLKE LIKVIQQEQH TYKDPITEFL ECLYVNYDFD
301: GAQQKLMECE QVILNDPFLG KRIEEGNFVT VPLRDEFLEN ARLFIFETYC RIHRCIDISM LSQKLNMSYD EAELWIMNLV RSSKLDARID SVSGTLIMTT
401: NHVNVHEQII ENLKGLNMRT YMLAKNIVEP AQAAQQATR
Best Arabidopsis Sequence Match ( AT3G57290.1 )
(BLAST)
001: MEESKQNYDL TPLIAPNLDR HLVFPIFEFL QERQLYPDEQ ILKSKIQLLN QTNMVDYAMD IHKSLYHTED APQEMVERRT EVVARLKSLE EAAAPLVSFL
101: LNPNAVQELR ADKQYNLQML KERYQIGPDQ IEALYQYAKF QFECGNYSGA ADYLYQYRTL CSNLERSLSA LWGKLASEIL MQNWDIALEE LNRLKEIIDS
201: KSFSSPLNQV QNRIWLMHWG LYIFFNHDNG RTQIIDLFNQ DKYLNAIQTS APHLLRYLAT AFIVNKRRRP QLKEFIKVIQ QEHYSYKDPI IEFLACVFVN
301: YDFDGAQKKM KECEEVIVND PFLGKRVEDG NFSTVPLRDE FLENARLFVF ETYCKIHQRI DMGVLAEKLN LNYEEAERWI VNLIRTSKLD AKIDSESGTV
401: IMEPTQPNVH EQLINHTKGL SGRTYKLVNQ LLEHTQAQAT R
Arabidopsis Description
TIF3E1Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:A0A178VL03]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.